Availability of code for extracting attributes from databases / studies

[lgeistlinger]

Thank you for providing such a useful resource! Maybe I am missing something, but is the code that was used for extracting microbial attributes (such as gram-stain, spore-formation, metabolic attributes, etc ...), ie the regular expressions that were used to automatically extract certain attributes from the mentioned databases / studies, available?

[nksjpl]

How do i provide a externally generated .csv file for filling in the microbial attributes. Any good tutorial will help. thanks. :)