- Updates citations to published version of Gerard (2023a) and in press version of Gerard (2023b).
- Add more options to
simgl()to increase the flexibility of the simulations. - Added an allopolyploid prior to the random mating tests.
- Updates package for compatibility with newer version of rstan.
- Added
rmbayes()and associated functions for Bayes tests for random mating. - Multiple restarts in EM algorithm for
rmlike()to fix issues with local convergence. - Added
rmbayesgl()for Bayes test of random mating when using genotype likelihoods to account for genotype uncertainty. This uses the{rstan}package as a backend. - Added
glsim()for genotype likelihood simulation. qqpvalue()will now allow the user to return a ggplot object.- Added
menbayesgl()for testing Mendelian segregation frequencies from S1 and F1 populations.
- New function,
qqpvalue(): A QQ-plot function for$p$ -values on the$-\log_{10}$ -scale. - New function,
ts_bands(): Calculates simultaneous confidence bands for uniform quantiles. - New function,
f1dr(): Estimates the double reduction rate from an F1 population via maximum likelihood. - Edit aggregation strategy so that it works a little better to mitigate the effects of the asymptotic approximation.
- Initial release.