error preparing mgi database

[lubinskibu]

I used the prepare database and -m=update approaches and found that I was getting back 0 size files for mgi's db.

What I found when I walked the code was that https://github.com/genescf/GeneSCF/blob/7c09329f79466f17430d1167d6c6659675144463/class/lib/db/update_GO.sh#L13 returns a status of 301 so it was trying to pull the gene_association.mgi.gz which doesn't exist, the rest of the code ran as expected, but starting with nothing lead to a successful failure outcome. forcing the original file to be mgi.gaf.gz worked and built the databases correctly.

[Kenneth-new-user]

Please elaborate on what you changed. I changed " http://geneontology.org/gene-associations/${organism}.gaf.gz" to " http://geneontology.org/gene-associations/mgi.gaf.gz" but the program is stil ltrying to pull gene_association.mgi.gz