pyproject.toml

[build-system]
requires = ["setuptools >= 61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "pyGenomeTracks"
version = "3.9"
authors = [
  { name = "Lucille Lopez-Delisle, Leily Rabbani, Joachim Wolf, Björn Grüning", email = "lucille.delisle@epfl.ch" },
]
description = "Command-line tool to make beautiful and reproducible genome browser snapshots"
readme = "README.md"
requires-python = ">=3.8,<4"
classifiers = [
    'Intended Audience :: Science/Research',
    'Topic :: Scientific/Engineering :: Bio-Informatics',
]
license = {file = "LICENSE"}
dependencies = [
    "numpy >=1.20",
    "matplotlib >=3.1.1,<3.9",
    "intervaltree >=2.1.0",
    "pyBigWig >=0.3.16",
    "future >=0.17.0",
    "hicmatrix >=15",
    "pysam >=0.14",
    "pytest",
    "gffutils >=0.9",
    "pybedtools >=0.8.1",
    "tqdm >=4.20",
    "bx-python >=0.8.13",
    "pyfaidx >=0.1.3"
]

[project.scripts]
make_tracks_file = "pygenometracks.makeTracksFile:main"
pyGenomeTracks = "pygenometracks.plotTracks:main"
pgt = "pygenometracks.plotTracks:main"

[project.urls]
Homepage = "https://github.com/deeptools/pyGenomeTracks"
Documentation = "https://pygenometracks.readthedocs.io"
Issues = "https://github.com/deeptools/pyGenomeTracks/issues"

[tool.setuptools]
package-dir = {'pygenometracks'= 'pygenometracks'}