hicPlotTADs in circos

[mujahida87]

Hi,
I was wondering if I can plot the TADs in circos format in pyGenomeTracks, similar to the attached screenshot? I'm using the following version of hicExplorer.

--Python3/3.9.0
--hicexplorer/3.7.1/

Thanks

Ref: Renschler, G., Richard, G., Valsecchi, C.I.K., Toscano, S., Arrigoni, L., Ramírez, F. and Akhtar, A., 2019. Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling. Genes & development, 33(21-22), pp.1591-1612.

[lldelisle]

Hi @mujahida87 ,
Thanks for your interest in pyGenomeTracks.
We rely on matplotlib and I don't think matplotlib can do this. I think the transformation was done after with Illustrator or Inkscape.

[mujahida87]

Okay, thank you @lldelisle

[MarineBergot]

Hi @mujahida87 by any chance did you find how to do that? i would like do to the same, but in couldn't find anything on circos! thanks!

[mujahida87]

Hi @MarineBergot, No! I asked the writer of the above circus figure, he said he did it manually.