geo-datasets

## GEO for downloaded datasets
#G4-seq
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63874
GSE63874_Na_K_PDS_minus_hits_intersect.bed.gz
GSE63874_Na_K_PDS_plus_hits_intersect.bed.gz

#K562 G4 ChIP-seq
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107690

#HAP1 RNA polII ChIP-seq
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72800
GSM1872287_Hg19ChipHisCyc50Hap1WtCTDR1.bw

#K562 H3K4me3 ChIP-seq
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108323
GSE108323_ChIP_seqMerge_H3K4me3_v2.bw

#HAP1 H3K4me3 ChIP-seq
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110133
GSM2978165_WT_K4_1.bw

#K562 R-loops
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70189
GSM1720619_K562_DRIP.wig.gz (--> was converted to bigwig)
and create files with overlap between NT2 and K562 peaks.

#RAD21 degron Hi-C
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104334

#RAD21 degron ChIP-seq
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104888
GSM2809609_Rao-2017-CHIP001-RAD21-untreated.bw
GSM2809610_Rao-2017-CHIP002-RAD21-treated.bw

#HAP1 H3K27ac
https://www.encodeproject.org/experiments/ENCSR131DVD/ --> was lifted to hg19. List of peaks.

#HAP1 DNAse
https://www.encodeproject.org/experiments/ENCSR620QNS/