From 9f0fde4c58ea337c16a6a71c6dbd592ad251e1dd Mon Sep 17 00:00:00 2001 From: "Pedro (Peter) Sanchez" Date: Mon, 26 May 2025 18:06:52 +0200 Subject: [PATCH] file extension to .slurm Change the file extension from .pbs to .slurm. Also, add a line on the main README.md on how to run it --- README.md | 3 ++- ...cute_snakemake_job.pbs => slurm_execute_snakemake_job.slurm | 0 2 files changed, 2 insertions(+), 1 deletion(-) rename slurm_execute_snakemake_job.pbs => slurm_execute_snakemake_job.slurm (100%) diff --git a/README.md b/README.md index 3c96432..46e7f5d 100755 --- a/README.md +++ b/README.md @@ -167,7 +167,8 @@ Once you have all the configuration files as desired, it's time to execute the p ```bash ./local_execute_snakemake.sh # local -./slurm_execute_snakemake.sh # HPC with slurm scheduler +./slurm_execute_snakemake.sh # HPC with slurm scheduler or +sbatch slurm_execute_snakemake_job.slurm # slurm launch as a job ``` If no rule is given it will automatically execute the rule `all` (which would execute the standard pipeline). diff --git a/slurm_execute_snakemake_job.pbs b/slurm_execute_snakemake_job.slurm similarity index 100% rename from slurm_execute_snakemake_job.pbs rename to slurm_execute_snakemake_job.slurm