From 421100b69a2f499e462130184f0016fcd1de137f Mon Sep 17 00:00:00 2001 From: Ramakrishnan RS Date: Sun, 25 Aug 2013 10:38:07 -0400 Subject: [PATCH] Modified annotate-seqs.py step in Building Transcript Families to conform with earlier code changes annotate-seqs.py and namedb.py were modified earlier to work with CMD line args instead of constant values. Tutorial has corresponding step updated to match with abovementioned code changes. Code issue ref: https://github.com/ctb/eel-pond/pull/4 --- mrnaseq/5-building-transcript-families.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/mrnaseq/5-building-transcript-families.txt b/mrnaseq/5-building-transcript-families.txt index 3c523ff..c6e7923 100644 --- a/mrnaseq/5-building-transcript-families.txt +++ b/mrnaseq/5-building-transcript-families.txt @@ -124,7 +124,7 @@ Prepare some of the mouse info:: And, finally, annotate the sequences:: - python /usr/local/share/eel-pond/annotate-seqs.py trinity-nematostella.renamed.fa nema.x.mouse.ortho nema.x.mouse.homol + python /usr/local/share/eel-pond/annotate-seqs.py trinity-nematostella.renamed.fa nema.x.mouse.ortho nema.x.mouse.homol mouse.namedb mouse.protein.faa This will produce a file 'trinity-nematostella.renamed.fa.annot', which will have sequences that look like this::