From 8489482e72fc4fd0c13d8b88eca04f809ba4cf7d Mon Sep 17 00:00:00 2001 From: Ram RS Date: Sun, 25 Aug 2013 21:39:52 -0400 Subject: [PATCH] Changes to 5-building-transcript-families to reflect changes in code make-namedb.py no longer needs .namedb input. CHanges result from https://github.com/ctb/eel-pond/pull/7 --- .gitignore | 1 + mrnaseq/5-building-transcript-families.txt | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index a3eb446..656641a 100644 --- a/.gitignore +++ b/.gitignore @@ -28,3 +28,4 @@ pip-log.txt _build *~ +/.project diff --git a/mrnaseq/5-building-transcript-families.txt b/mrnaseq/5-building-transcript-families.txt index 3c523ff..e1f7c1c 100644 --- a/mrnaseq/5-building-transcript-families.txt +++ b/mrnaseq/5-building-transcript-families.txt @@ -119,7 +119,7 @@ Now, calculate putative homology (best BLAST hit) and orthology Prepare some of the mouse info:: - python /usr/local/share/eel-pond/make-namedb.py mouse.protein.faa mouse.namedb + python /usr/local/share/eel-pond/make-namedb.py mouse.protein.faa python -m screed.fadbm mouse.protein.faa And, finally, annotate the sequences::