diff --git a/DCC/circAnnotate.py b/DCC/circAnnotate.py index ae1d375..fc04d10 100644 --- a/DCC/circAnnotate.py +++ b/DCC/circAnnotate.py @@ -75,7 +75,7 @@ def annotateregions(self,circfile, annotationfile): left = pybedtools.BedTool('_tmp_DCC/tmp_left') right = pybedtools.BedTool('_tmp_DCC/tmp_right') ann = pybedtools.BedTool(annotationfile) - overallintersect = overall.intersect(ann,wa=True,wb=True,loj=True,s=False) + overallintersect = overall.intersect(ann,wa=True,wb=True,loj=True,s=False,nonamecheck=True) leftintersect = left.intersect(ann,wa=True,wb=True,loj=True,s=False,nonamecheck=True) rightintersect = right.intersect(ann,wa=True,wb=True,loj=True,s=False,nonamecheck=True) overallresult = overallintersect.groupby(g=(1,2,3,6),c=9,o='distinct') @@ -199,4 +199,4 @@ def searchGeneName(self,annotationstring): return genes - \ No newline at end of file +