diff --git a/docs/articles/Recovery_scRNA.html b/docs/articles/Recovery_scRNA.html
index 2587c47..4975cb0 100644
--- a/docs/articles/Recovery_scRNA.html
+++ b/docs/articles/Recovery_scRNA.html
@@ -88,7 +88,7 @@ <h2 id="overview">Overview<a class="anchor" aria-label="anchor" href="#overview"
 <span><span class="fu"><a href="https://rdrr.io/r/base/message.html" class="external-link">suppressPackageStartupMessages</a></span><span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://satijalab.org/seurat" class="external-link">Seurat</a></span><span class="op">)</span><span class="op">)</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/message.html" class="external-link">suppressPackageStartupMessages</a></span><span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://r-datatable.com" class="external-link">data.table</a></span><span class="op">)</span><span class="op">)</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/message.html" class="external-link">suppressPackageStartupMessages</a></span><span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://googledrive.tidyverse.org" class="external-link">googledrive</a></span><span class="op">)</span><span class="op">)</span></span>
-<span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://digitalcytometry.github/spatialecotyper" class="external-link">SpatialEcoTyper</a></span><span class="op">)</span></span></code></pre></div>
+<span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://digitalcytometry.github/SpatialEcoTyper" class="external-link">SpatialEcoTyper</a></span><span class="op">)</span></span></code></pre></div>
 </div>
 <div class="section level2">
 <h2 id="data-preparation">Data preparation<a class="anchor" aria-label="anchor" href="#data-preparation"></a>
@@ -96,10 +96,10 @@ <h2 id="data-preparation">Data preparation<a class="anchor" aria-label="anchor"
 <p>The recovery process requires a normalized gene expression matrix and
 a vector of cell type annotations.</p>
 <details open><summary><strong>Starting from a Seurat object</strong>
-</summary><p>A seurat object for the demo data can be accessed from <a href="https://drive.google.com/open?id=17356t3n4vY581hogyi0Gmz4Sj5v804Vz&amp;usp=drive_fs" class="external-link">WU2161_seurat_obj.rds</a>.</p>
+</summary><p>A seurat object for the demo data can be accessed from <a href="https://drive.google.com/open?id=11ORWQxxWCNUtceEDwu2IyBpDMa6P-bxS&amp;usp=drive_fs" class="external-link">WU2161_seurat_obj.rds</a>.</p>
 <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://googledrive.tidyverse.org/reference/drive_deauth.html" class="external-link">drive_deauth</a></span><span class="op">(</span><span class="op">)</span> <span class="co"># Disable Google sign-in requirement</span></span>
-<span><span class="fu"><a href="https://googledrive.tidyverse.org/reference/drive_download.html" class="external-link">drive_download</a></span><span class="op">(</span><span class="fu"><a href="https://googledrive.tidyverse.org/reference/drive_id.html" class="external-link">as_id</a></span><span class="op">(</span><span class="st">"17356t3n4vY581hogyi0Gmz4Sj5v804Vz"</span><span class="op">)</span>, <span class="st">"WU2161_seurat_obj.rds"</span>, overwrite <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
+<span><span class="fu"><a href="https://googledrive.tidyverse.org/reference/drive_download.html" class="external-link">drive_download</a></span><span class="op">(</span><span class="fu"><a href="https://googledrive.tidyverse.org/reference/drive_id.html" class="external-link">as_id</a></span><span class="op">(</span><span class="st">"11ORWQxxWCNUtceEDwu2IyBpDMa6P-bxS"</span><span class="op">)</span>, <span class="st">"WU2161_seurat_obj.rds"</span>, overwrite <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
 <p>First, load the seurat object into R:</p>
 <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="co"># Load the seurat object</span></span>
@@ -113,7 +113,7 @@ <h2 id="data-preparation">Data preparation<a class="anchor" aria-label="anchor"
 <div class="sourceCode" id="cb5"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="co"># Cell type annotations</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/unique.html" class="external-link">unique</a></span><span class="op">(</span><span class="va">obj</span><span class="op">$</span><span class="va">CellType</span><span class="op">)</span></span></code></pre></div>
-<pre><code><span><span class="co">## [1] "Macrophage" "B"          "CD4T"       "CD8T"       "Neuron"    </span></span>
+<pre><code><span><span class="co">## [1] "Macrophage" "B"          "CD4T"       "CD8T"       "Other"     </span></span>
 <span><span class="co">## [6] "Fibroblast" "Epithelial" "Plasma"</span></span></code></pre>
 <p>Next, normalize the gene expression data using <a href="https://satijalab.org/seurat/articles/seurat5_spatial_vignette_2" class="external-link">SCTransform</a>
 or <a href="https://satijalab.org/seurat/reference/normalizedata" class="external-link">NormalizeData</a>.
@@ -159,7 +159,7 @@ <h2 id="data-preparation">Data preparation<a class="anchor" aria-label="anchor"
 <div class="sourceCode" id="cb12"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/table.html" class="external-link">table</a></span><span class="op">(</span><span class="va">ctann</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## ctann</span></span>
-<span><span class="co">##          B       CD4T       CD8T Epithelial Fibroblast Macrophage     Neuron </span></span>
+<span><span class="co">##          B       CD4T       CD8T Epithelial Fibroblast Macrophage      Other </span></span>
 <span><span class="co">##         97        138        425        121         44        374         91 </span></span>
 <span><span class="co">##     Plasma </span></span>
 <span><span class="co">##         47</span></span></code></pre>
@@ -220,10 +220,10 @@ <h2 id="data-preparation">Data preparation<a class="anchor" aria-label="anchor"
 <span><span class="va">ctann</span> <span class="op">=</span> <span class="va">ctann</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/match.html" class="external-link">match</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/colnames.html" class="external-link">colnames</a></span><span class="op">(</span><span class="va">normdata</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/colnames.html" class="external-link">rownames</a></span><span class="op">(</span><span class="va">ctann</span><span class="op">)</span><span class="op">)</span>, <span class="fl">1</span><span class="op">]</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/table.html" class="external-link">table</a></span><span class="op">(</span><span class="va">ctann</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## ctann</span></span>
-<span><span class="co">##          B       CD4T       CD8T Epithelial Fibroblast Macrophage     Plasma </span></span>
-<span><span class="co">##         97        138        425        121         44        374         47 </span></span>
-<span><span class="co">##    Unknown </span></span>
-<span><span class="co">##         91</span></span></code></pre>
+<span><span class="co">##          B       CD4T       CD8T Epithelial Fibroblast Macrophage      Other </span></span>
+<span><span class="co">##         97        138        425        121         44        374         91 </span></span>
+<span><span class="co">##     Plasma </span></span>
+<span><span class="co">##         47</span></span></code></pre>
 </details>
 </div>
 <div class="section level2">
@@ -325,7 +325,7 @@ <h2 id="session-info">Session info<a class="anchor" aria-label="anchor" href="#s
 <span><span class="co">## [8] base     </span></span>
 <span><span class="co">## </span></span>
 <span><span class="co">## other attached packages:</span></span>
-<span><span class="co">##  [1] SpatialEcoTyper_1.0.0 NMF_0.28              Biobase_2.64.0       </span></span>
+<span><span class="co">##  [1] SpatialEcoTyper_0.0.5 NMF_0.28              Biobase_2.64.0       </span></span>
 <span><span class="co">##  [4] BiocGenerics_0.50.0   cluster_2.1.6         rngtools_1.5.2       </span></span>
 <span><span class="co">##  [7] registry_0.5-1        RANN_2.6.2            Matrix_1.7-0         </span></span>
 <span><span class="co">## [10] googledrive_2.1.1     data.table_1.16.0     Seurat_5.1.0         </span></span>