The paper link is Doud and Bloom (2016).
1rvx_1trimer.pdb is the crystal structure of the closely related A/PR/8/1934 (H1N1) HA with only one of the two trimers in the asymmetric unit retained.
The following files are supplemental data files from Doud and Bloom (2016):
- Supplemental_File_2_HApreferences.txt: amino-acid preferences.
- Supplemental_File_3_HApreferences_rescaled.txt: re-scaled amino-acid preferences.
- Supplemental_File_6_WSN_to_H3_numbering_conversion.txt: mapping from sequential numbering of WSN HA to the H3 numbering scheme used in the PDB file.
The Jupyter notebook build_data.ipynb reads in the above supplemental data files and generates the data file for dms-view, Doud2016.csv.