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Forgi Library for RNA Secondary Structure Analysis

https://travis-ci.org/ViennaRNA/forgi.svg?branch=master

Full documentation: https://viennarna.github.io/forgi

Citing

If your use of forgi results in an academic publication, please cite:

Thiel BC, Beckmann IK, Kerpedjiev P and Hofacker IL. 3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements. [version 2; peer review: 2 approved]. F1000Research 2019, 8:287 (https://doi.org/10.12688/f1000research.18458.2)

For the pseudoknot-removal code and external PDB annotation tools, see the citations therein.

Locally build the documentation

sphinx-build -b html doc OUTPUTFOLDER