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environment.yml
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name: swe4s
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- aioeasywebdav=2.4.0=py38h32f6830_1001
- aiohttp=3.7.2=py38h1e0a361_0
- amply=0.1.4=py_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=3.0.1=py_1000
- atk=2.36.0=3
- atk-1.0=2.36.0=h63f31ab_3
- attrs=20.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.1=py_0
- bcrypt=3.2.0=py38h1e0a361_1
- boto3=1.16.10=pyhd8ed1ab_0
- botocore=1.19.10=pyhd3deb0d_0
- brotlipy=0.7.0=py38h8df0ef7_1001
- bzip2=1.0.8=h516909a_3
- c-ares=1.16.1=h516909a_3
- ca-certificates=2020.12.5=ha878542_0
- cachetools=4.1.1=py_0
- cairo=1.16.0=h488836b_1006
- certifi=2020.12.5=py38h578d9bd_0
- cffi=1.14.3=py38h1bdcb99_1
- chardet=3.0.4=py38h924ce5b_1008
- coincbc=2.10.5=hab63836_0
- configargparse=1.2.3=pyh9f0ad1d_0
- cryptography=3.2.1=py38h7699a38_0
- datrie=0.8.2=py38h1e0a361_1
- decorator=4.4.2=py_0
- docutils=0.16=py38h924ce5b_2
- dropbox=10.4.1=pyh9f0ad1d_0
- et_xmlfile=1.0.1=py_1001
- expat=2.2.9=he1b5a44_2
- fftw=3.3.8=nompi_h7f3a6c3_1111
- filechunkio=1.8=py_2
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=2.001=hab24e00_0
- font-ttf-source-code-pro=2.030=hab24e00_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=h7e3eb15_1002
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h7ca028e_0
- fribidi=1.0.10=h36c2ea0_0
- ftputil=4.0.0=py_0
- gdk-pixbuf=2.38.2=h3f25603_6
- gettext=0.19.8.1=hf34092f_1004
- ghostscript=9.53.3=he1b5a44_1
- giflib=5.2.1=h36c2ea0_2
- gitdb=4.0.5=py_0
- gitpython=3.1.11=py_0
- glib=2.66.2=h58526e2_0
- gobject-introspection=1.66.1=py38he66682d_2
- google-api-core=1.22.2=py38h32f6830_0
- google-api-python-client=1.12.5=pyh9f0ad1d_0
- google-auth=1.23.0=pyhd8ed1ab_0
- google-auth-httplib2=0.0.4=pyh9f0ad1d_0
- google-cloud-core=1.4.3=pyh9f0ad1d_0
- google-cloud-storage=1.19.0=py_0
- google-crc32c=1.0.0=py38h6d3b9ce_1
- google-resumable-media=1.1.0=pyh9f0ad1d_0
- googleapis-common-protos=1.52.0=py38h578d9bd_1
- graphite2=1.3.13=h58526e2_1001
- graphviz=2.42.3=h6939c30_2
- grpcio=1.33.2=py38heead2fc_2
- gtk2=2.24.32=h194ddfc_3
- gts=0.7.6=h17b2bb4_1
- harfbuzz=2.7.2=hb1ce69c_1
- httplib2=0.18.1=pyh9f0ad1d_0
- icu=67.1=he1b5a44_0
- idna=2.10=pyh9f0ad1d_0
- imagemagick=7.0.10_28=pl526h201ca68_0
- importlib-metadata=2.0.0=py_1
- importlib_metadata=2.0.0=1
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h516909a_2002
- jdcal=1.4.1=py_0
- jinja2=2.11.2=pyh9f0ad1d_0
- jmespath=0.10.0=pyh9f0ad1d_0
- jpeg=9d=h36c2ea0_0
- jsonschema=3.2.0=py_2
- jupyter_core=4.6.3=py38h32f6830_2
- ld_impl_linux-64=2.34=hc38a660_9
- libblas=3.8.0=17_openblas
- libcblas=3.8.0=17_openblas
- libcrc32c=1.1.1=he1b5a44_2
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=9.3.0=h24d8f2e_16
- libgfortran-ng=7.5.0=hdf63c60_16
- libglib=2.66.2=hbe7bbb4_0
- libgomp=9.3.0=h24d8f2e_16
- libiconv=1.16=h516909a_0
- liblapack=3.8.0=17_openblas
- libopenblas=0.3.10=pthreads_hb3c22a3_4
- libpng=1.6.37=h21135ba_2
- libprotobuf=3.13.0.1=h8b12597_0
- librsvg=2.50.1=h33a7fed_0
- libsodium=1.0.18=h516909a_1
- libstdcxx-ng=9.3.0=hdf63c60_16
- libtiff=4.1.0=h4f3a223_6
- libtool=2.4.6=h58526e2_1006
- libuuid=2.32.1=h14c3975_1000
- libwebp=1.1.0=h56121f0_4
- libwebp-base=1.1.0=h36c2ea0_3
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.10=h68273f3_2
- lz4-c=1.9.2=he1b5a44_3
- markupsafe=1.1.1=py38h8df0ef7_2
- multidict=4.7.5=py38h1e0a361_2
- nbformat=5.0.8=py_0
- ncurses=6.2=he1b5a44_1
- networkx=2.5=py_0
- numpy=1.19.1=py38hbc27379_2
- oauth2client=4.1.3=py_0
- openjpeg=2.3.1=h981e76c_3
- openpyxl=3.0.5=py_0
- openssl=1.1.1h=h516909a_0
- pango=1.42.4=h80147aa_5
- paramiko=2.7.2=pyh9f0ad1d_0
- pcre=8.44=he1b5a44_0
- perl=5.26.2=h36c2ea0_1008
- pip=20.2.3=py_0
- pixman=0.38.0=h516909a_1003
- pkg-config=0.29.2=h36c2ea0_1008
- prettytable=1.0.1=pyhd8ed1ab_0
- protobuf=3.13.0.1=py38h950e882_1
- psutil=5.7.3=py38h8df0ef7_0
- pthread-stubs=0.4=h14c3975_1001
- pulp=2.3.1=py38h32f6830_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycodestyle=2.6.0=pyh9f0ad1d_0
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.7.2=py_0
- pygraphviz=1.6=py38h25c7686_1
- pynacl=1.4.0=py38h1e0a361_2
- pyopenssl=19.1.0=py_1
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.17.3=py38h1e0a361_1
- pysftp=0.2.9=py_1
- pysocks=1.7.1=py38h924ce5b_2
- python=3.8.5=h1103e12_7_cpython
- python-dateutil=2.8.1=py_0
- python-irodsclient=0.8.2=py_0
- python_abi=3.8=1_cp38
- pyyaml=5.3.1=py38h8df0ef7_1
- ratelimiter=1.2.0=py_1002
- readline=8.0=he28a2e2_2
- requests=2.24.0=pyh9f0ad1d_0
- rsa=4.6=pyh9f0ad1d_0
- s3transfer=0.3.3=py_3
- setuptools=49.6.0=py38h32f6830_0
- simplejson=3.17.2=py38h1e0a361_1
- six=1.15.0=pyh9f0ad1d_0
- slacker=0.14.0=py_0
- smmap=3.0.4=pyh9f0ad1d_0
- snakemake=5.27.4=0
- snakemake-minimal=5.27.4=py_0
- sqlite=3.33.0=h4cf870e_0
- tk=8.6.10=hed695b0_0
- toposort=1.5=py_3
- traitlets=5.0.5=py_0
- typing-extensions=3.7.4.3=0
- typing_extensions=3.7.4.3=py_0
- uritemplate=3.0.1=py_0
- urllib3=1.25.11=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.35.1=pyh9f0ad1d_0
- wrapt=1.12.1=py38h1e0a361_1
- xmlrunner=1.7.7=py_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.12=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxpm=3.5.13=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-libxt=1.1.5=h516909a_1003
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h516909a_0
- yarl=1.6.2=py38h1e0a361_0
- zipp=3.4.0=py_0
- zlib=1.2.11=h516909a_1009
- zstd=1.4.5=h6597ccf_2
- pip:
- cycler==0.10.0
- kiwisolver==1.2.0
- matplotlib==3.3.2
- nd2reader==3.2.3
- opencv-contrib-python==4.4.0.46
- pandas==1.1.4
- pillow==8.0.0
- pims==0.5
- pytz==2020.1
- setuptools-scm==4.1.2
- slicerator==1.0.0
- xmltodict==0.12.0
prefix: /home/jovyan/.conda/envs/swe4s