From b5d086badf2777c2f6a175cc87285aafc01cce6c Mon Sep 17 00:00:00 2001
From: jiajic <72078254+jiajic@users.noreply.github.com>
Date: Tue, 28 Nov 2023 14:30:09 -0500
Subject: [PATCH 1/3] test renaming

---
 tests/testthat/{test_createObject.R => test-createObject.R}       | 0
 .../{test_create_mini_vizgen.R => test-create_mini_vizgen.R}      | 0
 tests/testthat/{test_gobject.R => test-gobject.R}                 | 0
 .../{test_spatial_converters.R => test-spatial_converters.R}      | 0
 4 files changed, 0 insertions(+), 0 deletions(-)
 rename tests/testthat/{test_createObject.R => test-createObject.R} (100%)
 rename tests/testthat/{test_create_mini_vizgen.R => test-create_mini_vizgen.R} (100%)
 rename tests/testthat/{test_gobject.R => test-gobject.R} (100%)
 rename tests/testthat/{test_spatial_converters.R => test-spatial_converters.R} (100%)

diff --git a/tests/testthat/test_createObject.R b/tests/testthat/test-createObject.R
similarity index 100%
rename from tests/testthat/test_createObject.R
rename to tests/testthat/test-createObject.R
diff --git a/tests/testthat/test_create_mini_vizgen.R b/tests/testthat/test-create_mini_vizgen.R
similarity index 100%
rename from tests/testthat/test_create_mini_vizgen.R
rename to tests/testthat/test-create_mini_vizgen.R
diff --git a/tests/testthat/test_gobject.R b/tests/testthat/test-gobject.R
similarity index 100%
rename from tests/testthat/test_gobject.R
rename to tests/testthat/test-gobject.R
diff --git a/tests/testthat/test_spatial_converters.R b/tests/testthat/test-spatial_converters.R
similarity index 100%
rename from tests/testthat/test_spatial_converters.R
rename to tests/testthat/test-spatial_converters.R

From 8bac82f4c51c436c1f2ed4d9e78c703e892b8ef5 Mon Sep 17 00:00:00 2001
From: jiajic <72078254+jiajic@users.noreply.github.com>
Date: Tue, 28 Nov 2023 14:32:43 -0500
Subject: [PATCH 2/3] filename typos

---
 R/{methods_crop.R => methods-crop.R}           | 0
 R/{methods_setGiotto.R => methods-setGiotto.R} | 0
 2 files changed, 0 insertions(+), 0 deletions(-)
 rename R/{methods_crop.R => methods-crop.R} (100%)
 rename R/{methods_setGiotto.R => methods-setGiotto.R} (100%)

diff --git a/R/methods_crop.R b/R/methods-crop.R
similarity index 100%
rename from R/methods_crop.R
rename to R/methods-crop.R
diff --git a/R/methods_setGiotto.R b/R/methods-setGiotto.R
similarity index 100%
rename from R/methods_setGiotto.R
rename to R/methods-setGiotto.R

From df7d6445ff719837aacaafabb719d129a41a030b Mon Sep 17 00:00:00 2001
From: jiajic <72078254+jiajic@users.noreply.github.com>
Date: Tue, 28 Nov 2023 15:03:18 -0500
Subject: [PATCH 3/3] run document

---
 DESCRIPTION         | 4 ++--
 man/crop-generic.Rd | 2 +-
 man/setGiotto.Rd    | 2 +-
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 275ebc8f..d1c07455 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -98,6 +98,7 @@ Collate:
     'methods-centroids.R'
     'methods-coerce.R'
     'methods-copy.R'
+    'methods-crop.R'
     'methods-dims.R'
     'methods-ext.R'
     'methods-extract.R'
@@ -110,13 +111,12 @@ Collate:
     'methods-plot.R'
     'methods-rbind.R'
     'methods-rescale.R'
+    'methods-setGiotto.R'
     'methods-show.R'
     'methods-spatShift.R'
     'methods-spin.R'
     'methods-transpose.R'
     'methods-wrap.R'
-    'methods_crop.R'
-    'methods_setGiotto.R'
     'provenance.R'
     'python_bento.R'
     'python_environment.R'
diff --git a/man/crop-generic.Rd b/man/crop-generic.Rd
index 2f855e6b..d0e43843 100644
--- a/man/crop-generic.Rd
+++ b/man/crop-generic.Rd
@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/methods_crop.R
+% Please edit documentation in R/methods-crop.R
 \name{crop-generic}
 \alias{crop-generic}
 \alias{crop,giottoLargeImage-method}
diff --git a/man/setGiotto.Rd b/man/setGiotto.Rd
index 1f382908..63fb860e 100644
--- a/man/setGiotto.Rd
+++ b/man/setGiotto.Rd
@@ -1,5 +1,5 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/methods_setGiotto.R
+% Please edit documentation in R/methods-setGiotto.R
 \name{setGiotto}
 \alias{setGiotto}
 \alias{setGiotto,giotto,cellMetaObj-method}