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GiottoUtils 0.2.1 (2024/11/4)

New

  • suite_packages() for reporting the names of Giotto Suite modules
  • suite_install() for installing specific branches of Giotto Suite

GiottoUtils 0.2.0 (2024/10/26)

Breaking change

  • R version requirement is now 4.4.1

New

  • gwith_package(), gwith_options(), gwith_seed() for setting temporary conditions for eval
  • handle_warnings() for graceful warning handling

GiottoUtils 0.1.12 (2024/09/27)

New

  • pbar() and with_pbar() as progress reporting utils. These are wrappers around progressr functionalities.
  • reexports of fromJSON() and read_json() from jsonlite.
  • melt_matrix() to emulate reshape2::melt.matrix() (deprecated package) for most use cases in Giotto.

GiottoUtils 0.1.11 (2024/08/22)

New

  • py_active_env() utility function for detecting any active python environment without initializing

Enhancement

  • package_check() now works for pip github installs
  • package_check() now reports which conda environment is being activated and what python version it is.

GiottoUtils 0.1.10 (2024/07/26)

New

  • dir_manifest() for creating a named list of files within a directory. Mostly wraps list.files()

GiottoUtils 0.1.9 (2024/07/12)

New

  • deprecate_param() utility function for streamlining code
  • print_list() for pretty printing of list-like objects
  • from_scipy_sparse() for conversion from scipy csr and csc to Matrix dgCMatrix and dgRMatrix

Changes

  • newer github version checking refactored into new_github_ver_avail()

GiottoUtils 0.1.8 (2024/05/22)

New

  • wrap_txtf() variant of wrap_txt() that uses sprintf() formatting
  • init_option() for setting an option if it does not exist

Enhancement

  • dt_to_matrix() can now chunk the conversion to Matrix to avoid memory issues
  • get_args_list() now has a keep param that allows selection of which collected args to keep

GiottoUtils 0.1.6 (2024/02/26)

New

  • %null%, %na%, and %none% infix operators for setting a default value when an object is, respectively, NULL, NA, or length of 0.
  • local_seed() for transiently setting a seed only for the duration of a function

GiottoUtils 0.1.5 (2024/02/11)

Bug Fixes

  • str_locate2() now works with vectorized inputs like the stringr counterpart
  • str_locate2() no-matches now properly return NA_integer_ instead of negative values

New

  • to_scipy_sparse() conversion of R matrices to scipy sparse representations

GiottoUtils 0.1.4 (2024/02/05)

Enhancement

  • new seed param for getDistinctColors() that allows the ordering of the distinct colors to be changed.
  • package_check() now allows more than one package to be checked using repo:location notation.

GiottoUtils 0.1.3

Added

  • Add: mixedsort() and mixedorder() from gtools

GiottoUtils 0.1.2 (2024/01/02)

Added

  • Add: getMonochromeColors() basic color palette function. Useful for image colorization.

GiottoUtils 0.1.1 (2023/12/16)

Breaking changes

  • Remove checkmate reexports
  • Remove deprecated flex_lapply()
  • Rename guard_against_notgiotto() to assert_giotto()
  • Rename set_row_order_dt() to dt_set_row_order()
  • Rename dcast_dt_string() to dt_dcast_string()
  • Rename sort_combine_two_DT_columns() to dt_sort_combine_two_columns()
  • Rename DT_removeNA() to dt_remove_na()
  • Rename assert_DT() to assert_dt()

Added

  • Add gstop() as a framework for sending module specific error messages
  • Add str_locate2() (implementation of stringr::str_locate() in base R)
  • Add str_vector() for pretty printing a vector as a string
  • Add: str_bracket(), str_parenth(), str_quote(), str_double_quote() convenience functions
  • Move: get_prev_fname(), get_args(), and get_prev_call() to this package
  • Add get_prev_call()
  • Move basic color palettes getDistinctColors() and getRainbowColors() to this package
  • Add: RColorBrewer to suggests for getDistinctColors()

Changes

  • improvements to assert_giotto()

GiottoUtils 0.1.0 (2023/11/29)

Initial release