mkdocs.yml

site_name: "Enzax"
site_description: Differentiable models of enzyme-catalysed reaction networks, with JAX
use_directory_urls: False
theme:
  name: "material"
  features:
    - content.tabs.link
    - content.code.annotate
    - content.code.copy
    - announce.dismiss
    - navigation.sections
  # logo: '_static/bibat-light.svg'
  # favicon: '_static/bibat-light.svg'
repo_url: https://github.com/dtu-qmcm/enzax
plugins:
- search
- mkdocstrings:
    handlers:
      python:
        paths: [src/enzax]
        options:
          show_bases: false
          docstring_style: sphinx
          members_order: source
          group_by_category: false
          filters: ["!^_"]
          docstring_options:
            warn_unknown_params: false

markdown_extensions:
  - admonition
  - pymdownx.keys
  - pymdownx.snippets
  - pymdownx.superfences
  - pymdownx.tabbed
  - attr_list
  - md_in_html

nav:
  - Home: 'index.md'
  - Getting started: 'getting_started.md'
  - Contributing: 'contributing.md'
  - Accessibility: 'accessibility.md'
  - API:
    - 'api/kinetic_model.md'
    - 'api/rate_equations.md'
    - 'api/steady_state.md'
    - 'api/mcmc.md'