-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathorg_manuscript.bib
1137 lines (1027 loc) · 33.6 KB
/
org_manuscript.bib
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
@article{damian2019evolution,
title={The Evolution of Siphonophore Tentilla as Specialized Tools for Prey Capture},
author={Damian-Serrano, Alejandro and Haddock, Steven HD and Dunn, Casey W},
journal={bioRxiv},
pages={653345},
year={2019},
publisher={Cold Spring Harbor Laboratory}
}
@article{schmitz2017predator,
title={Predator and prey functional traits: understanding the adaptive machinery driving predator--prey interactions},
author={Schmitz, Oswald},
journal={F1000Research},
volume={6},
year={2017},
publisher={Faculty of 1000 Ltd}
}
@book{skaer1988formation,
title={The formation of cnidocyte patterns in siphonophores},
author={Skaer, RJ},
year={1988},
publisher={Academic Press New York}
}
@article{Mackie:1987uy,
author = {Mackie, G O and Pugh, P. R. and Purcell, J. E.},
title = {{Siphonophore Biology}},
journal = {Advances in Marine Biology},
year = {1987},
volume = {24},
pages = {97--262},
annote = {Times Cited: 32
Review
English
Cited References Count: 339
M9114},
affiliation = {Mackie, G. O.
Univ Victoria,Dept Biol,Pob 1700,Victoria V8w 2y2,Bc,Canada
Inst Oceanog Sci,Godalming Gu8 5ub,Surrey,England
Univ Maryland,Horn Point Environm Labs,Cambridge,Md 21613},
read = {Yes},
rating = {0},
date-added = {2011-04-22T20:50:33GMT},
date-modified = {2016-08-05T19:37:36GMT},
local-url = {file://localhost/Users/cdunn/Dropbox/articles/Library.papers3/Articles/1987/Mackie/Adv.%20Mar.%20Biol.%201987%20Mackie.pdf},
file = {{Adv. Mar. Biol. 1987 Mackie.pdf:/Users/cdunn/Dropbox/articles/Library.papers3/Articles/1987/Mackie/Adv. Mar. Biol. 1987 Mackie.pdf:application/pdf}},
uri = {\url{papers3://publication/uuid/5CEE7B56-8858-4B34-8AEB-16E21EB57DDB}}
}
@article{purcell1980influence,
title={Influence of siphonophore behavior upon their natural diets: evidence for aggressive mimicry},
author={Purcell, Jennifer E},
journal={Science},
volume={209},
number={4460},
pages={1045--1047},
year={1980},
publisher={American Association for the Advancement of Science}
}
@article{haddock2005bioluminescent,
title={Bioluminescent and red-fluorescent lures in a deep-sea siphonophore},
author={Haddock, Steven HD and Dunn, Casey W and Pugh, Philip R and Schnitzler, Christine E},
journal={Science},
volume={309},
number={5732},
pages={263--263},
year={2005},
publisher={American Association for the Advancement of Science}
}
@article{mapstone2014global,
title={Global diversity and review of Siphonophorae (Cnidaria: Hydrozoa)},
author={Mapstone, Gillian M},
journal={PLoS One},
volume={9},
number={2},
pages={e87737},
year={2014},
publisher={Public Library of Science}
}
@article{purcell1984functions,
title={The functions of nematocysts in prey capture by epipelagic siphonophores (Coelenterata, Hydrozoa)},
author={Purcell, Jennifer E},
journal={The Biological Bulletin},
volume={166},
number={2},
pages={310--327},
year={1984},
publisher={Marine Biological Laboratory}
}
@misc{purcell1988correlation,
title={The correlation of nematocyst types to diets in pelagic Hydrozoa. In ‘The Biology of Nematocysts’.(Eds DA Hessinger and HM Lenhoff.) pp. 463--485},
author={Purcell, JE and Mills, CE},
year={1988},
publisher={Academic Press: San Diego, CA}
}
@book{pugh1983benthic,
title={Benthic Siphonophores: A Review of the Family Rhodaliidai (Siphonophora, Physonectae)},
author={Pugh, PR},
year={1983},
publisher={Royal Society}
}
@article{robison2004deep,
title={Deep pelagic biology},
author={Robison, Bruce H},
journal={Journal of experimental marine biology and ecology},
volume={300},
number={1-2},
pages={253--272},
year={2004},
publisher={Elsevier}
}
@article{hardin1960competitive,
title={The competitive exclusion principle},
author={Hardin, Garrett},
journal={science},
volume={131},
number={3409},
pages={1292--1297},
year={1960},
publisher={JSTOR}
}
@article{hutchinson1961paradox,
title={The paradox of the plankton},
author={Hutchinson, G Evelyn},
journal={The American Naturalist},
volume={95},
number={882},
pages={137--145},
year={1961},
publisher={Science Press}
}
@article{choy2017deep,
title={Deep pelagic food web structure as revealed by in situ feeding observations},
author={Choy, C Anela and Haddock, Steven HD and Robison, Bruce H},
journal={Proceedings of the Royal Society B: Biological Sciences},
volume={284},
number={1868},
pages={20172116},
year={2017},
publisher={The Royal Society}
}
@article{costello2015multi,
title={Multi-jet propulsion organized by clonal development in a colonial siphonophore},
author={Costello, John H and Colin, Sean P and Gemmell, Brad J and Dabiri, John O and Sutherland, Kelly R},
journal={Nature communications},
volume={6},
pages={8158},
year={2015},
publisher={Nature Publishing Group}
}
@article{munro2018improved,
title={Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution},
author={Munro, Catriona and Siebert, Stefan and Zapata, Felipe and Howison, Mark and Serrano, Alejandro Damian and Church, Samuel H and Goetz, Freya E and Pugh, Philip R and Haddock, Steven HD and Dunn, Casey W},
journal={Molecular Phylogenetics and Evolution},
year={2018},
publisher={Elsevier}
}
@article{david2008evolution,
title={Evolution of complex structures: minicollagens shape the cnidarian nematocyst},
author={David, Charles N and {\"O}zbek, Suat and Adamczyk, Patrizia and Meier, Sebastian and Pauly, Barbara and Chapman, Jarrod and Hwang, Jung Shan and Gojobori, Takashi and Holstein, Thomas W},
journal={Trends in genetics},
volume={24},
number={9},
pages={431--438},
year={2008},
publisher={Elsevier}
}
@article{pigliucci2003phenotypic,
title={Phenotypic integration: studying the ecology and evolution of complex phenotypes},
author={Pigliucci, Massimo},
journal={Ecology Letters},
volume={6},
number={3},
pages={265--272},
year={2003},
publisher={Wiley Online Library}
}
@incollection{wagner2000evolutionarily,
title={Evolutionarily stable configurations: functional integration and the evolution of phenotypic stability},
author={Wagner, G{\"u}nter P and Schwenk, Kurt},
booktitle={Evolutionary biology},
pages={155--217},
year={2000},
publisher={Springer}
}
@article{wagner1995biological,
title={The biological role of homologues: A building block hypothesis},
author={Wagner, G{\"u}nter P},
journal={Neues Jahrbuch f{\"u}r Geologie und Pal{\"a}ontologie-Abhandlungen},
pages={279--288},
year={1995},
publisher={Schweizerbart'sche Verlagsbuchhandlung}
}
@incollection{thomason1988allometry,
title={The allometry of nematocysts},
author={Thomason, JC},
booktitle={The Biology of Nematocysts},
pages={575--588},
year={1988},
publisher={Elsevier}
}
@article{carre1980triggering,
title={On triggering and control of cnidocyst discharge},
author={Carr{\'e}, Dani{\`e}le and Carr{\'e}, Claude},
journal={Marine \& Freshwater Behaviour \& Phy},
volume={7},
number={1},
pages={109--117},
year={1980},
publisher={Taylor \& Francis}
}
@book{wainwright1994ecological,
title={Ecological morphology: integrative organismal biology},
author={Wainwright, Peter C and Reilly, Stephen M},
year={1994},
publisher={University of Chicago Press}
}
@book{haddock2005scientific,
title={Scientific blue-water diving},
author={Haddock, Steven HD and Heine, John N},
year={2005},
publisher={California Sea Grant College Program}
}
@article{collins2007imagej,
title={ImageJ for microscopy},
author={Collins, Tony J},
journal={Biotechniques},
volume={43},
number={S1},
pages={S25--S30},
year={2007},
publisher={Future Science}
}
@article{schindelin2012fiji,
title={Fiji: an open-source platform for biological-image analysis},
author={Schindelin, Johannes and Arganda-Carreras, Ignacio and Frise, Erwin and Kaynig, Verena and Longair, Mark and Pietzsch, Tobias and Preibisch, Stephan and Rueden, Curtis and Saalfeld, Stephan and Schmid, Benjamin and others},
journal={Nature methods},
volume={9},
number={7},
pages={676},
year={2012},
publisher={Nature Publishing Group}
}
@article{katoh2002mafft,
title={MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform},
author={Katoh, Kazutaka and Misawa, Kazuharu and Kuma, Kei-ichi and Miyata, Takashi},
journal={Nucleic acids research},
volume={30},
number={14},
pages={3059--3066},
year={2002},
publisher={Oxford University Press}
}
@article{nguyen2014iq,
title={IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies},
author={Nguyen, Lam-Tung and Schmidt, Heiko A and von Haeseler, Arndt and Minh, Bui Quang},
journal={Molecular biology and evolution},
volume={32},
number={1},
pages={268--274},
year={2014},
publisher={Oxford University Press}
}
@article{kalyaanamoorthy2017modelfinder,
title={ModelFinder: fast model selection for accurate phylogenetic estimates},
author={Kalyaanamoorthy, Subha and Minh, Bui Quang and Wong, Thomas KF and von Haeseler, Arndt and Jermiin, Lars S},
journal={Nature methods},
volume={14},
number={6},
pages={587},
year={2017},
publisher={Nature Publishing Group}
}
@article{hohna2016revbayes,
title={RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language},
author={H{\"o}hna, Sebastian and Landis, Michael J and Heath, Tracy A and Boussau, Bastien and Lartillot, Nicolas and Moore, Brian R and Huelsenbeck, John P and Ronquist, Fredrik},
journal={Systematic Biology},
volume={65},
number={4},
pages={726--736},
year={2016},
publisher={Oxford University Press}
}
@article{purcell1981dietary,
title={Dietary composition and diel feeding patterns of epipelagic siphonophores},
author={Purcell, JE},
journal={Marine Biology},
volume={65},
number={1},
pages={83--90},
year={1981},
publisher={Springer}
}
@article{biggs1977field,
title={Field studies of fishing, feeding, and digestion in siphonophores},
author={Biggs, Douglas C},
journal={Marine \& Freshwater Behaviour \& Phy},
volume={4},
number={4},
pages={261--274},
year={1977},
publisher={Taylor \& Francis}
}
@article{pugh1988two,
title={Two new species of prayine siphonophore (Calycophorae, Prayidae) collected by the submersibles Johnson-Sea-Link I and II},
author={Pugh, PR and Youngbluth, MJ},
journal={Journal of Plankton Research},
volume={10},
number={4},
pages={637--657},
year={1988},
publisher={Oxford University Press}
}
@article{bardi2007taxonomic,
title={Taxonomic redescription of the Portuguese man-of-war, Physalia physalis (Cnidaria, Hydrozoa, Siphonophorae, Cystonectae) from Brazil},
author={Bardi, Juliana and Marques, Antonio C},
journal={Iheringia. S{\'e}rie Zoologia},
volume={97},
number={4},
pages={425--433},
year={2007},
publisher={SciELO Brasil}
}
@article{hissmann2005situ,
title={In situ observations on benthic siphonophores (Physonectae: Rhodaliidae) and descriptions of three new species from Indonesia and South Africa},
author={Hissmann, Karen},
journal={Systematics and Biodiversity},
volume={2},
number={3},
pages={223--249},
year={2005},
publisher={Taylor \& Francis}
}
@article{jacobs1974quantitative,
title={Quantitative measurement of food selection},
author={Jacobs, J{\"u}rgen},
journal={Oecologia},
volume={14},
number={4},
pages={413--417},
year={1974},
publisher={Springer}
}
@misc{team2017r,
title={R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2017},
author={Team, R Core},
year={2017},
publisher={ISBN3-900051-07-0 https://www. R-project. org}
}
@article{harmon2007geiger,
title={GEIGER: investigating evolutionary radiations},
author={Harmon, Luke J and Weir, Jason T and Brock, Chad D and Glor, Richard E and Challenger, Wendell},
journal={Bioinformatics},
volume={24},
number={1},
pages={129--131},
year={2007},
publisher={Oxford University Press}
}
@article{martins1996phylogenies,
title={Phylogenies, spatial autoregression, and the comparative method: a computer simulation test},
author={Martins, Emilia P},
journal={Evolution},
volume={50},
number={5},
pages={1750--1765},
year={1996},
publisher={Wiley Online Library}
}
@article{harmon2010early,
title={Early bursts of body size and shape evolution are rare in comparative data},
author={Harmon, Luke J and Losos, Jonathan B and Jonathan Davies, T and Gillespie, Rosemary G and Gittleman, John L and Bryan Jennings, W and Kozak, Kenneth H and McPeek, Mark A and Moreno-Roark, Franck and Near, Thomas J and others},
journal={Evolution: International Journal of Organic Evolution},
volume={64},
number={8},
pages={2385--2396},
year={2010},
publisher={Wiley Online Library}
}
@article{uhlenbeck1930theory,
title={On the theory of the Brownian motion},
author={Uhlenbeck, George E and Ornstein, Leonard S},
journal={Physical review},
volume={36},
number={5},
pages={823},
year={1930},
publisher={APS}
}
@article{butler2004phylogenetic,
title={Phylogenetic comparative analysis: a modeling approach for adaptive evolution},
author={Butler, Marguerite A and King, Aaron A},
journal={The American Naturalist},
volume={164},
number={6},
pages={683--695},
year={2004},
publisher={The University of Chicago Press}
}
@article{sugiura1978further,
title={Further analysts of the data by akaike's information criterion and the finite corrections: Further analysts of the data by akaike's},
author={Sugiura, Nariaki},
journal={Communications in Statistics-Theory and Methods},
volume={7},
number={1},
pages={13--26},
year={1978},
publisher={Taylor \& Francis}
}
@article{pennell2015model,
title={Model adequacy and the macroevolution of angiosperm functional traits},
author={Pennell, Matthew W and FitzJohn, Richard G and Cornwell, William K and Harmon, Luke J},
journal={The American Naturalist},
volume={186},
number={2},
pages={E33--E50},
year={2015},
publisher={University of Chicago Press Chicago, IL}
}
@article{blomberg2003testing,
title={Testing for phylogenetic signal in comparative data: behavioral traits are more labile},
author={Blomberg, Simon P and Garland, Theodore and Ives, Anthony R},
journal={Evolution},
volume={57},
number={4},
pages={717--745},
year={2003},
publisher={Wiley Online Library}
}
@article{adams2016geomorph,
title={geomorph: Software for geometric morphometric analyses},
author={Adams, Dean C and Collyer, Michael and Kaliontzopoulou, Antigoni and Sherratt, Emma},
year={2016},
publisher={Comprehensive R Archive Network}
}
@article{revell2012phytools,
title={phytools: an R package for phylogenetic comparative biology (and other things)},
author={Revell, Liam J},
journal={Methods in Ecology and Evolution},
volume={3},
number={2},
pages={217--223},
year={2012},
publisher={Wiley Online Library}
}
@article{felsenstein1985phylogenies,
title={Phylogenies and the comparative method},
author={Felsenstein, Joseph},
journal={The American Naturalist},
volume={125},
number={1},
pages={1--15},
year={1985},
publisher={University of Chicago Press}
}
@article{revell2014rphylip,
title={Rphylip: an R interface for PHYLIP},
author={Revell, Liam J and Chamberlain, Scott A},
journal={Methods in Ecology and Evolution},
volume={5},
number={9},
pages={976--981},
year={2014},
publisher={Wiley Online Library}
}
@article{rabosky2014bamm,
title={BAMM tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees},
author={Rabosky, Daniel L and Grundler, Michael and Anderson, Carlos and Title, Pascal and Shi, Jeff J and Brown, Joseph W and Huang, Huateng and Larson, Joanna G},
journal={Methods in Ecology and Evolution},
volume={5},
number={7},
pages={701--707},
year={2014},
publisher={Wiley Online Library}
}
@article{paradis2019package,
title={Package ‘ape’},
author={Paradis, Emmanuel and Blomberg, Simon and Bolker, Ben and Brown, Joseph and Claude, Julien and Cuong, Hoa Sien and Desper, Richard},
journal={Analyses of phylogenetics and evolution, version},
pages={2--4},
year={2019}
}
@misc{beaulieu2012ouwie,
title={OUwie: analysis of evolutionary rates in an OU framework. R package version 1.17},
author={Beaulieu, JM and O’Meara, B},
year={2012}
}
@article{pagel1994detecting,
title={Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters},
author={Pagel, Mark},
journal={Proceedings of the Royal Society of London. Series B: Biological Sciences},
volume={255},
number={1342},
pages={37--45},
year={1994},
publisher={The Royal Society London}
}
@article{grafen1989phylogenetic,
title={The phylogenetic regression},
author={Grafen, Alan},
journal={Philosophical Transactions of the Royal Society of London. B, Biological Sciences},
volume={326},
number={1233},
pages={119--157},
year={1989},
publisher={The Royal Society London}
}
@article{jombart2010discriminant,
title={Discriminant analysis of principal components: a new method for the analysis of genetically structured populations},
author={Jombart, Thibaut and Devillard, S{\'e}bastien and Balloux, Fran{\c{c}}ois},
journal={BMC genetics},
volume={11},
number={1},
pages={94},
year={2010},
publisher={BioMed Central}
}
@article{pugh2014review,
title={A review of the physonect siphonophore genera Halistemma (Family Agalmatidae) and Stephanomia (Family Stephanomiidae)},
author={Pugh, PR and Baxter, EJ},
journal={Zootaxa},
volume={3897},
number={1},
pages={1--111},
year={2014}
}
@article{dunn2005molecular,
title={Molecular phylogenetics of the siphonophora (Cnidaria), with implications for the evolution of functional specialization},
author={Dunn, Casey W and Pugh, Philip R and Haddock, Steven HD},
journal={Systematic biology},
volume={54},
number={6},
pages={916--935},
year={2005},
publisher={Taylor \& Francis}
}
@book{totton1965synopsis,
title={A synopsis of the Siphonophora},
author={Totton, Arthur Knyvett and Bargmann, Helene E},
year={1965},
publisher={British Museum (Natural History)}
}
@article{siebert2013re,
title={Re-evaluation of characters in Apolemiidae (Siphonophora), with description of two new species from Monterey Bay, California},
author={Siebert, Stefan and Pugh, Phil R and Haddock, Steven HD and Dunn, Casey W},
journal={Zootaxa},
volume={3702},
number={3},
pages={201--232},
year={2013}
}
@article{mariscal1974nematocysts,
title={Nematocysts.},
author={Mariscal, Richard N},
year={1974}
}
@inproceedings{skaer1991remodelling,
title={Remodelling during the development of nematocysts in a siphonophore},
author={Skaer, RJ},
booktitle={Hydrobiologia},
volume={216},
number={1},
pages={685--689},
year={1991},
organization={Springer}
}
@article{blyth1972simpson,
title={On Simpson's paradox and the sure-thing principle},
author={Blyth, Colin R},
journal={Journal of the American Statistical Association},
volume={67},
number={338},
pages={364--366},
year={1972},
publisher={Taylor \& Francis}
}
@article{uyeda2018rethinking,
title={Rethinking phylogenetic comparative methods},
author={Uyeda, Josef C and Zenil-Ferguson, Rosana and Pennell, Matthew W},
journal={Systematic Biology},
volume={67},
number={6},
pages={1091--1109},
year={2018},
publisher={Oxford University Press}
}
@article{lande1976natural,
title={Natural selection and random genetic drift in phenotypic evolution},
author={Lande, Russell},
journal={Evolution},
volume={30},
number={2},
pages={314--334},
year={1976},
publisher={Wiley Online Library}
}
@article{hansen1996translating,
title={Translating between microevolutionary process and macroevolutionary patterns: the correlation structure of interspecific data},
author={Hansen, Thomas F and Martins, Emilia P},
journal={Evolution},
volume={50},
number={4},
pages={1404--1417},
year={1996},
publisher={Wiley Online Library}
}
@article{carre1972study,
title={Study on development of cnidocysts in gastrozooids of Muggiaea kochi (Will, 1844) (Siphonophora, Calycophora)},
author={Carr{\'e}, D},
journal={Comptes Rendus Hebdomadaires des Seances de l'Academie des Sciences Serie D},
volume={275},
number={12},
pages={1263},
year={1972},
publisher={Gauthier-Villars/Editions Elsevier 23 Rue Linois, 75015 Paris, France}
}
@article{kayal2015phylogenetic,
title={Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondrial transcription},
author={Kayal, Ehsan and Bentlage, Bastian and Cartwright, Paulyn and Yanagihara, Angel A and Lindsay, Dhugal J and Hopcroft, Russell R and Collins, Allen G},
journal={PeerJ},
volume={3},
pages={e1403},
year={2015},
publisher={PeerJ Inc.}
}
@article{longhurst1985structure,
title={The structure and evolution of plankton communities},
author={Longhurst, Alan R},
journal={Progress in Oceanography},
volume={15},
number={1},
pages={1--35},
year={1985},
publisher={Elsevier}
}
@article{o2007copepod,
title={COPEPOD, a global plankton database: a review of the 2007 database contents and new quality control methodology},
author={O'Brien, Todd D},
year={2007}
}
@incollection{hessinger1988nematocyst,
title={Nematocyst venoms and toxins},
author={Hessinger, David A},
booktitle={The biology of nematocysts},
pages={333--368},
year={1988},
publisher={Elsevier}
}
@article{mitra2009closure,
title={Are closure terms appropriate or necessary descriptors of zooplankton loss in nutrient--phytoplankton--zooplankton type models?},
author={Mitra, Aditee},
journal={Ecological Modelling},
volume={220},
number={5},
pages={611--620},
year={2009},
publisher={Elsevier}
}
@article{schluter2000ecological,
title={Ecological character displacement in adaptive radiation},
author={Schluter, Dolph},
journal={the american naturalist},
volume={156},
number={S4},
pages={S4--S16},
year={2000},
publisher={The University of Chicago Press}
}
@article{futuyma1988evolution,
title={The evolution of ecological specialization},
author={Futuyma, Douglas J and Moreno, Gabriel},
journal={Annual review of Ecology and Systematics},
volume={19},
number={1},
pages={207--233},
year={1988},
publisher={Annual Reviews 4139 El Camino Way, PO Box 10139, Palo Alto, CA 94303-0139, USA}
}
@book{simpson1955major,
title={Major features of evolution},
author={Simpson, George Gaylord},
year={1955},
publisher={Columbia University Press: New York}
}
@article{pugh2001review,
title={A review of the genus Erenna Bedot, 1904 (Siphonophora, Physonectae)},
author={Pugh, PR},
journal={BULLETIN-NATURAL HISTORY MUSEUM ZOOLOGY SERIES},
volume={67},
number={2},
pages={169--182},
year={2001},
publisher={THE NATURAL HISTORY MUSEUM}
}
@article{shapiro1965analysis,
title={An analysis of variance test for normality (complete samples)},
author={Shapiro, Samuel Sanford and Wilk, Martin B},
journal={Biometrika},
volume={52},
number={3/4},
pages={591--611},
year={1965},
publisher={JSTOR}
}
@book{andersen1981redescription,
title={Redescription of Marrus orthocanna (Kramp, 1942)(Cnidaria, Siphonophora)},
author={Andersen, Ole G Norden},
year={1981},
publisher={Zoological Museum, University of Copenhagen}
}
@article{werner1965nesselkapseln,
title={Die Nesselkapseln der Cnidaria, mit besonderer Ber{\"u}cksichtigung der Hydroida},
author={Werner, Bernhard},
journal={Helgol{\"a}nder wissenschaftliche Meeresuntersuchungen},
volume={12},
number={1},
pages={1},
year={1965}
}
@book{simpson1944tempo,
title={Tempo and mode in evolution},
author={Simpson, George Gaylord},
number={15},
year={1944},
publisher={Columbia University Press}
}
@article{stireman2005evolution,
title={The evolution of generalization? Parasitoid flies and the perils of inferring host range evolution from phylogenies},
author={Stireman-III, John O},
journal={Journal of evolutionary biology},
volume={18},
number={2},
pages={325--336},
year={2005},
publisher={Wiley Online Library}
}
@article{johnson2009competition,
title={Competition promotes the evolution of host generalists in obligate parasites},
author={Johnson, Kevin P and Malenke, Jael R and Clayton, Dale H},
journal={Proceedings of the Royal Society B: Biological Sciences},
volume={276},
number={1675},
pages={3921--3926},
year={2009},
publisher={The Royal Society}
}
@article{hoberg2008macroevolutionary,
title={A macroevolutionary mosaic: episodic host-switching, geographical colonization and diversification in complex host--parasite systems},
author={Hoberg, Eric P and Brooks, Daniel R},
journal={Journal of Biogeography},
volume={35},
number={9},
pages={1533--1550},
year={2008},
publisher={Wiley Online Library}
}
@article{haddock2015fluorescent,
title={Fluorescent proteins function as a prey attractant: experimental evidence from the hydromedusa Olindias formosus and other marine organisms},
author={Haddock, Steven HD and Dunn, Casey W},
journal={Biology open},
volume={4},
number={9},
pages={1094--1104},
year={2015},
publisher={The Company of Biologists Ltd}
}
@article{cressler2015detecting,
title={Detecting adaptive evolution in phylogenetic comparative analysis using the Ornstein--Uhlenbeck model},
author={Cressler, Clayton E and Butler, Marguerite A and King, Aaron A},
journal={Systematic biology},
volume={64},
number={6},
pages={953--968},
year={2015},
publisher={Oxford University Press}
}
@article{revell2009phylogenetic,
title={Phylogenetic analysis of the evolutionary correlation using likelihood},
author={Revell, Liam J and Collar, David C},
journal={Evolution: International Journal of Organic Evolution},
volume={63},
number={4},
pages={1090--1100},
year={2009},
publisher={Wiley Online Library}
}
@article{young2005serial,
title={Serial homology and the evolution of mammalian limb covariation structure},
author={Young, Nathan M and Hallgr{\'I}msson, Benedikt},
journal={Evolution},
volume={59},
number={12},
pages={2691--2704},
year={2005},
publisher={Wiley Online Library}
}
@article{goswami2006morphological,
title={Morphological integration in the carnivoran skull},
author={Goswami, Anjali},
journal={Evolution},
volume={60},
number={1},
pages={169--183},
year={2006},
publisher={Wiley Online Library}
}
@article{monteiro2010adaptive,
title={Adaptive radiations, ecological specialization, and the evolutionary integration of complex morphological structures},
author={Monteiro, Leandro R and Nogueira, Marcelo R},
journal={Evolution: International Journal of Organic Evolution},
volume={64},
number={3},
pages={724--744},
year={2010},
publisher={Wiley Online Library}
}
@article{hallgrimsson2012generation,
title={The generation of variation and the developmental basis for evolutionary novelty},
author={Hallgr{\'\i}msson, Benedikt and Jamniczky, Heather A and Young, Nathan M and Rolian, Campbell and SCHMIDT-OTT, URS and Marcucio, Ralph S},
journal={Journal of Experimental Zoology Part B: Molecular and Developmental Evolution},
volume={318},
number={6},
pages={501--517},
year={2012},
publisher={Wiley Online Library}
}
@article{claverie2013modularity,
title={Modularity and rates of evolutionary change in a power-amplified prey capture system},
author={Claverie, Thomas and Patek, SN},
journal={Evolution},
volume={67},
number={11},
pages={3191--3207},
year={2013},
publisher={Wiley Online Library}
}
@article{caetano2018estimating,
title={Estimating correlated rates of trait evolution with uncertainty},
author={Caetano, Daniel S and Harmon, Luke J},
journal={Systematic biology},
volume={68},
number={3},
pages={412--429},
year={2018},
publisher={Oxford University Press}
}
@article{collar2005comparative,
title={Comparative analysis of morphological diversity: does disparity accumulate at the same rate in two lineages of centrarchid fishes?},
author={Collar, David C and Near, Thomas J and Wainwright, Peter C},
journal={Evolution},
volume={59},
number={8},
pages={1783--1794},
year={2005},
publisher={Wiley Online Library}
}
@article{nosil2002transition,
title={Transition rates between specialization and generalization in phytophagous insects},
author={Nosil, P},
journal={Evolution},
volume={56},
number={8},
pages={1701--1706},
year={2002},
publisher={Wiley Online Library}
}
@article{nosil2005testing,
title={Testing hypotheses about ecological specialization using phylogenetic trees},
author={Nosil, P and Mooers, A{\O}},
journal={Evolution},
volume={59},
number={10},
pages={2256--2263},
year={2005},
publisher={Wiley Online Library}
}
@article{hardy2014specialization,
title={Specialization and generalization in the diversification of phytophagous insects: tests of the musical chairs and oscillation hypotheses},
author={Hardy, Nate B and Otto, Sarah P},
journal={Proceedings of the Royal Society B: Biological Sciences},
volume={281},
number={1795},
pages={20132960},
year={2014},
publisher={The Royal Society}
}
@article{cunningham1993molecular,
title={Molecular evidence for multiple episodes of paedomorphosis in the family Hydractiniidae},
author={Cunningham, Clifford W and Buss, Leo W},
journal={Biochemical Systematics and Ecology},
volume={21},
number={1},
pages={57--69},
year={1993},
publisher={Elsevier}
}
@incollection{bode1988control,
title={Control of nematocyte differentiation in Hydra},
author={Bode, Hans},
booktitle={The biology of Nematocysts},
pages={209--232},
year={1988},
publisher={Elsevier}
}
@article{wagner1996homologues,