From 2f6468662289f25498348091851ca3732f2ef54b Mon Sep 17 00:00:00 2001
From: sassy <sassy@hp>
Date: Tue, 5 Nov 2024 16:08:35 +0000
Subject: [PATCH 1/2] adding easyconfigs: RAxML-NG-1.2.2-GCC-13.2.0.eb

---
 .../r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb   | 44 +++++++++++++++++++
 1 file changed, 44 insertions(+)
 create mode 100644 easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb

diff --git a/easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb b/easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb
new file mode 100644
index 000000000000..e4a2c353676f
--- /dev/null
+++ b/easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb
@@ -0,0 +1,44 @@
+# EasyBuild easyconfig
+#
+# Contributed from Fred Hutchinson Cancer Research Center, Seattle WA, US 
+# John Dey jfdey@fredhutch.org
+#
+easyblock = 'CMakeMake'
+
+name = 'RAxML-NG'
+version = '1.2.2'
+
+homepage = 'https://github.com/amkozlov/raxml-ng'
+description = """RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML)
+ optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree
+ Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree."""
+
+toolchain = {'name': 'GCC', 'version': '13.2.0'}
+
+sources = [{
+    'filename': '%(version)s.tar.gz',
+    'git_config': {
+        'url': 'https://github.com/amkozlov',
+        'repo_name': '%(namelower)s',
+        'tag': '%(version)s',
+        'recursive': True,
+        'keep_git_dir': True,
+    }
+}]
+checksums = [None]
+
+builddependencies = [
+    ('CMake', '3.27.6'),
+    ('Bison', '3.8.2'),
+    ('flex', '2.6.4'),
+    ('GMP', '6.3.0'),
+]
+
+sanity_check_paths = {
+    'files': ['bin/raxml-ng'],
+    'dirs': [],
+}
+
+sanity_check_commands = ["raxml-ng --help"]
+
+moduleclass = 'bio'

From 2b970e1df3d9f56f30766d5b9e65098437eba11f Mon Sep 17 00:00:00 2001
From: sassy <sassy@hp>
Date: Fri, 15 Nov 2024 16:48:14 +0000
Subject: [PATCH 2/2] tests added, GMP added correctly

---
 .../easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb  | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb b/easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb
index e4a2c353676f..a181d6523c89 100644
--- a/easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb
+++ b/easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb
@@ -31,9 +31,18 @@ builddependencies = [
     ('CMake', '3.27.6'),
     ('Bison', '3.8.2'),
     ('flex', '2.6.4'),
+    ('googletest', '1.14.0'),
+]
+
+dependencies = [
     ('GMP', '6.3.0'),
 ]
 
+preconfigopts = "sed -i 's/c++11/c++14/g' %(builddir)s/raxml-ng/CMakeLists.txt && "
+configopts = '-DUSE_GMP=ON '
+
+runtest = 'test '
+
 sanity_check_paths = {
     'files': ['bin/raxml-ng'],
     'dirs': [],