edit descriptions/labels, new icons

CHANGELOG.md

@@ -27,6 +27,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/) and this p
 
 - complete validation for IRI parameters
 - remove "Annnotate inferred subclass axioms" parameter in Reason plugin
+- new icons
 
 ## [1.0.0alpha3] 2024-06-28
 

cmem_plugin_reason/plugin_reason.py

@@ -33,12 +33,11 @@
 
 @Plugin(
     label="Reason",
-    icon=Icon(file_name="obofoundry.png", package=__package__),
-    description="Given a data and an ontology graph, this task performs reasoning using ROBOT.",
-    documentation="""A task performing reasoning using ROBOT (ROBOT is an OBO Tool).
-    It takes an OWL ontology and a data graph as inputs and writes the reasoning result
-    to a specified graph. The following reasoner options are supported: ELK, Expression
-    Materializing Reasoner, HermiT, JFact, Structural Reasoner and Whelk.""",
+    icon=Icon(file_name="reason.png", package=__package__),
+    description="Performs OWL reasoning.",
+    documentation="""A task performing OWL reasoning. With an OWL ontology and a data graph as input
+    the reasoning result is written to a specified graph. The following reasoners are supported:
+    ELK, Expression Materializing Reasoner, HermiT, JFact, Structural Reasoner and Whelk.""",
     parameters=[
         REASONER_PARAMETER,
         ONTOLOGY_GRAPH_IRI_PARAMETER,

cmem_plugin_reason/plugin_validate.py

@@ -40,9 +40,13 @@
 
 @Plugin(
     label="Validate",
-    description="",
-    documentation="""""",
-    icon=Icon(package=__package__, file_name="obofoundry.png"),
+    description="Validates the consistency of an OWL ontology.",
+    documentation="""A task validating the consistency of an OWL ontology and generating an
+    explanation if inconsistencies are found. The explanation can be written to the project as a
+    Markdown file and/or to a specified graph. The Markdown string is also provided as an output
+    entity using the path "text". The following reasoners are supported: ELK, Expression
+    Materializing Reasoner, HermiT, JFact, Structural Reasoner and Whelk.""",
+    icon=Icon(package=__package__, file_name="validate.png"),
     parameters=[
         REASONER_PARAMETER,
         ONTOLOGY_GRAPH_IRI_PARAMETER,

cmem_plugin_reason/utils.py

@@ -129,13 +129,14 @@ def post_provenance(plugin: WorkflowPlugin, context: ExecutionContext) -> None:
     project_graph = f"http://di.eccenca.com/project/{context.task.project_id()}"
 
     type_query = f"""
-    SELECT ?type ?label {{
-        GRAPH <{project_graph}> {{
-            <{plugin_iri}> a ?type .
-            <{plugin_iri}> <http://www.w3.org/2000/01/rdf-schema#label> ?label .
-            FILTER(STRSTARTS(STR(?type), "https://vocab.eccenca.com/di/functions/"))
+        SELECT ?type ?label {{
+            GRAPH <{project_graph}> {{
+                <{plugin_iri}> a ?type .
+                <{plugin_iri}> <http://www.w3.org/2000/01/rdf-schema#label> ?label .
+                FILTER(STRSTARTS(STR(?type), "https://vocab.eccenca.com/di/functions/"))
+            }}
         }}
-    }}"""
+    """
 
     result = json.loads(post_select(query=type_query))
 
@@ -160,7 +161,8 @@ def post_provenance(plugin: WorkflowPlugin, context: ExecutionContext) -> None:
                 <{plugin_iri}> ?parameter ?o .
                 FILTER(STRSTARTS(STR(?parameter), "https://vocab.eccenca.com/di/functions/param_"))
             }}
-        }}"""
+        }}
+    """
 
     new_plugin_iri = f'{"_".join(plugin_iri.split("_")[:-1])}_{token_hex(8)}'
     result = json.loads(post_select(query=parameter_query))
@@ -179,6 +181,7 @@ def post_provenance(plugin: WorkflowPlugin, context: ExecutionContext) -> None:
                 <{new_plugin_iri}> <http://www.w3.org/2000/01/rdf-schema#label> "{plugin_label}" .
                 {param_sparql}
             }}
-        }}"""
+        }}
+    """
 
     post_update(query=insert_query)