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Permalink for ice sheet velocity notebook 1 #146

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yoniv1 opened this issue Jul 23, 2024 · 3 comments · May be fixed by #148
Open

Permalink for ice sheet velocity notebook 1 #146

yoniv1 opened this issue Jul 23, 2024 · 3 comments · May be fixed by #148
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@yoniv1
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yoniv1 commented Jul 23, 2024

Data Type

Satellite ECVs - Land Hydrology & Cryosphere

Assessment Category

Trend Assessment

Dataset Name

satellite-greenland-ice-sheet-velocity

Question Number

1

Workflow ID

eqctier3-a196e88d-1650-481a-9486-7cee7941c358

Zipped Notebook

ice_sheet_iv-1.ipynb.zip

Environment

name: wp5
channels:
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - affine=2.4.0=pyhd8ed1ab_0
  - aiohttp=3.9.5=py311h459d7ec_0
  - aiosignal=1.3.1=pyhd8ed1ab_0
  - alsa-lib=1.2.12=h4ab18f5_0
  - annotated-types=0.7.0=pyhd8ed1ab_0
  - ansicolors=1.1.8=pyhd8ed1ab_0
  - antlr-python-runtime=4.11.1=pyhd8ed1ab_0
  - anyio=4.4.0=pyhd8ed1ab_0
  - argon2-cffi=23.1.0=pyhd8ed1ab_0
  - argon2-cffi-bindings=21.2.0=py311h459d7ec_4
  - arrow=1.3.0=pyhd8ed1ab_0
  - asciitree=0.3.3=py_2
  - asttokens=2.4.1=pyhd8ed1ab_0
  - async-lru=2.0.4=pyhd8ed1ab_0
  - attr=2.5.1=h166bdaf_1
  - attrs=23.2.0=pyh71513ae_0
  - aws-c-auth=0.7.22=hf36ad8f_6
  - aws-c-cal=0.6.15=h816f305_1
  - aws-c-common=0.9.23=h4ab18f5_0
  - aws-c-compression=0.2.18=he027950_7
  - aws-c-event-stream=0.4.2=hb72ac1a_14
  - aws-c-http=0.8.2=h75ac8c9_3
  - aws-c-io=0.14.9=hd3d3696_3
  - aws-c-mqtt=0.10.4=hb0abfc5_7
  - aws-c-s3=0.5.10=h44b787d_4
  - aws-c-sdkutils=0.1.16=he027950_3
  - aws-checksums=0.1.18=he027950_7
  - aws-crt-cpp=0.26.12=he940a02_1
  - aws-sdk-cpp=1.11.329=h0f5bab0_6
  - azure-core-cpp=1.12.0=h830ed8b_0
  - azure-identity-cpp=1.8.0=hdb0d106_1
  - azure-storage-blobs-cpp=12.11.0=ha67cba7_1
  - azure-storage-common-cpp=12.6.0=he3f277c_1
  - azure-storage-files-datalake-cpp=12.10.0=h29b5301_1
  - babel=2.14.0=pyhd8ed1ab_0
  - beautifulsoup4=4.12.3=pyha770c72_0
  - bleach=6.1.0=pyhd8ed1ab_0
  - blosc=1.21.6=hef167b5_0
  - bokeh=3.4.2=pyhd8ed1ab_0
  - bottleneck=1.4.0=py311h18e1886_1
  - branca=0.7.2=pyhd8ed1ab_0
  - brotli=1.1.0=hd590300_1
  - brotli-bin=1.1.0=hd590300_1
  - brotli-python=1.1.0=py311hb755f60_1
  - bzip2=1.0.8=hd590300_5
  - c-ares=1.28.1=hd590300_0
  - ca-certificates=2024.6.2=hbcca054_0
  - cached-property=1.5.2=hd8ed1ab_1
  - cached_property=1.5.2=pyha770c72_1
  - cads-api-client=1.0.3=pyhd8ed1ab_0
  - cairo=1.18.0=hbb29018_2
  - cartopy=0.23.0=py311h14de704_1
  - cdsapi=0.7.0=pyhd8ed1ab_0
  - certifi=2024.6.2=pyhd8ed1ab_0
  - cf-units=3.2.0=py311h18e1886_5
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  - cffi=1.16.0=py311hb3a22ac_0
  - cfgrib=0.9.13.0=pyhd8ed1ab_0
  - cfitsio=4.4.1=hf8ad068_0
  - cftime=1.6.4=py311h18e1886_0
  - charset-normalizer=3.3.2=pyhd8ed1ab_0
  - click=8.1.7=unix_pyh707e725_0
  - click-plugins=1.1.1=py_0
  - cligj=0.7.2=pyhd8ed1ab_1
  - cloudpickle=3.0.0=pyhd8ed1ab_0
  - cmocean=4.0.3=pyhd8ed1ab_0
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  - comm=0.2.2=pyhd8ed1ab_0
  - contourpy=1.2.1=py311h9547e67_0
  - cycler=0.12.1=pyhd8ed1ab_0
  - cytoolz=0.12.3=py311h459d7ec_0
  - dask=2024.6.2=pyhd8ed1ab_0
  - dask-core=2024.6.2=pyhd8ed1ab_0
  - dask-expr=1.1.6=pyhd8ed1ab_0
  - dbus=1.13.6=h5008d03_3
  - debugpy=1.8.2=py311h4332511_0
  - decorator=5.1.1=pyhd8ed1ab_0
  - defusedxml=0.7.1=pyhd8ed1ab_0
  - distributed=2024.6.2=pyhd8ed1ab_0
  - eccodes=2.34.0=he84ddb8_0
  - entrypoints=0.4=pyhd8ed1ab_0
  - esmf=8.6.1=nompi_h0a5817f_2
  - esmpy=8.6.1=pyhc1e730c_0
  - exceptiongroup=1.2.0=pyhd8ed1ab_2
  - executing=2.0.1=pyhd8ed1ab_0
  - expat=2.6.2=h59595ed_0
  - fasteners=0.17.3=pyhd8ed1ab_0
  - findlibs=0.0.5=pyhd8ed1ab_0
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  - fmt=10.2.1=h00ab1b0_0
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  - fontconfig=2.14.2=h14ed4e7_0
  - fonts-conda-ecosystem=1=0
  - fonts-conda-forge=1=0
  - fonttools=4.53.0=py311h331c9d8_0
  - fqdn=1.5.1=pyhd8ed1ab_0
  - freeglut=3.2.2=ha6d2627_3
  - freetype=2.12.1=h267a509_2
  - freexl=2.0.0=h743c826_0
  - frozenlist=1.4.1=py311h459d7ec_0
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  - geopandas=1.0.0=pyhd8ed1ab_0
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  - geos=3.12.1=h59595ed_0
  - geotiff=1.7.3=hf7fa9e8_1
  - gettext=0.22.5=h59595ed_2
  - gettext-tools=0.22.5=h59595ed_2
  - gflags=2.2.2=he1b5a44_1004
  - giflib=5.2.2=hd590300_0
  - glib=2.80.2=h8a4344b_1
  - glib-tools=2.80.2=h73ef956_1
  - glog=0.7.1=hbabe93e_0
  - graphite2=1.3.13=h59595ed_1003
  - greenlet=3.0.3=py311hb755f60_0
  - gst-plugins-base=1.24.5=hbaaba92_0
  - gstreamer=1.24.5=haf2f30d_0
  - h11=0.14.0=pyhd8ed1ab_0
  - h2=4.1.0=pyhd8ed1ab_0
  - harfbuzz=8.5.0=hfac3d4d_0
  - hdf4=4.2.15=h2a13503_7
  - hdf5=1.14.3=nompi_hdf9ad27_105
  - hpack=4.0.0=pyh9f0ad1d_0
  - httpcore=1.0.5=pyhd8ed1ab_0
  - httpx=0.27.0=pyhd8ed1ab_0
  - hyperframe=6.0.1=pyhd8ed1ab_0
  - icu=73.2=h59595ed_0
  - idna=3.7=pyhd8ed1ab_0
  - importlib-metadata=8.0.0=pyha770c72_0
  - importlib_metadata=8.0.0=hd8ed1ab_0
  - importlib_resources=6.4.0=pyhd8ed1ab_0
  - ipykernel=6.29.4=pyh3099207_0
  - ipython=8.26.0=pyh707e725_0
  - isoduration=20.11.0=pyhd8ed1ab_0
  - jasper=4.2.4=h536e39c_0
  - jedi=0.19.1=pyhd8ed1ab_0
  - jinja2=3.1.4=pyhd8ed1ab_0
  - joblib=1.4.2=pyhd8ed1ab_0
  - json-c=0.17=h7ab15ed_0
  - json5=0.9.25=pyhd8ed1ab_0
  - jsonpointer=3.0.0=py311h38be061_0
  - jsonschema=4.22.0=pyhd8ed1ab_0
  - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
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  - jupyter-server-proxy=4.2.0=pyhd8ed1ab_0
  - jupyter_client=8.6.2=pyhd8ed1ab_0
  - jupyter_core=5.7.2=py311h38be061_0
  - jupyter_events=0.10.0=pyhd8ed1ab_0
  - jupyter_server=2.14.1=pyhd8ed1ab_0
  - jupyter_server_terminals=0.5.3=pyhd8ed1ab_0
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  - jupyterlab-myst=2.4.2=pyhd8ed1ab_0
  - jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
  - jupyterlab_server=2.27.2=pyhd8ed1ab_0
  - kealib=1.5.3=hee9dde6_1
  - keyutils=1.6.1=h166bdaf_0
  - kiwisolver=1.4.5=py311h9547e67_1
  - krb5=1.21.3=h659f571_0
  - lame=3.100=h166bdaf_1003
  - lcms2=2.16=hb7c19ff_0
  - ld_impl_linux-64=2.40=hf3520f5_7
  - lerc=4.0.0=h27087fc_0
  - libabseil=20240116.2=cxx17_h59595ed_0
  - libaec=1.1.3=h59595ed_0
  - libarchive=3.7.4=hfca40fe_0
  - libarrow=16.1.0=h4a673ee_10_cpu
  - libarrow-acero=16.1.0=hac33072_10_cpu
  - libarrow-dataset=16.1.0=hac33072_10_cpu
  - libarrow-substrait=16.1.0=h7e0c224_10_cpu
  - libasprintf=0.22.5=h661eb56_2
  - libasprintf-devel=0.22.5=h661eb56_2
  - libblas=3.9.0=22_linux64_openblas
  - libboost-headers=1.85.0=ha770c72_2
  - libbrotlicommon=1.1.0=hd590300_1
  - libbrotlidec=1.1.0=hd590300_1
  - libbrotlienc=1.1.0=hd590300_1
  - libcap=2.69=h0f662aa_0
  - libcblas=3.9.0=22_linux64_openblas
  - libclang-cpp15=15.0.7=default_h127d8a8_5
  - libclang13=18.1.8=default_h6ae225f_0
  - libcrc32c=1.1.2=h9c3ff4c_0
  - libcups=2.3.3=h4637d8d_4
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  - libgpg-error=1.50=h4f305b6_0
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  - libsystemd0=255=h3516f8a_1
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  - ncurses=6.5=h59595ed_0
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  - networkx=3.3=pyhd8ed1ab_1
  - notebook-shim=0.2.4=pyhd8ed1ab_0
  - nspr=4.35=h27087fc_0
  - nss=3.101=h593d115_0
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  - numcodecs=0.12.1=py311h4332511_1
  - numpy=1.26.4=py311h64a7726_0
  - numpy_groupies=0.11.1=pyhd8ed1ab_0
  - openjpeg=2.5.2=h488ebb8_0
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  - pandas=2.2.2=py311h14de704_1
  - pandoc=3.2.1=ha770c72_0
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  - pydantic-settings=2.3.4=pyhd8ed1ab_0
  - pydoe=0.3.8=py_1
  - pygments=2.18.0=pyhd8ed1ab_0
  - pyogrio=0.9.0=py311hfc743a8_0
  - pyparsing=3.1.2=pyhd8ed1ab_0
  - pyproj=3.6.1=py311hc21b84f_7
  - pyqt=5.15.9=py311hf0fb5b6_5
  - pyqt5-sip=12.12.2=py311hb755f60_5
  - pyshp=2.3.1=pyhd8ed1ab_0
  - pysocks=1.7.1=pyha2e5f31_6
  - python=3.11.9=hb806964_0_cpython
  - python-dateutil=2.9.0=pyhd8ed1ab_0
  - python-dotenv=1.0.1=pyhd8ed1ab_0
  - python-eccodes=1.7.1=py311h18e1886_0
  - python-fastjsonschema=2.20.0=pyhd8ed1ab_0
  - python-json-logger=2.0.7=pyhd8ed1ab_0
  - python-tzdata=2024.1=pyhd8ed1ab_0
  - python_abi=3.11=4_cp311
  - pytz=2024.1=pyhd8ed1ab_0
  - pyyaml=6.0.1=py311h459d7ec_1
  - pyzmq=26.0.3=py311h08a0b41_0
  - qt-main=5.15.8=ha2b5568_22
  - rasterio=1.3.10=py311h539dff6_4
  - re2=2023.09.01=h7f4b329_2
  - readline=8.2=h8228510_1
  - referencing=0.35.1=pyhd8ed1ab_0
  - regionmask=0.12.1=pyhd8ed1ab_0
  - requests=2.32.3=pyhd8ed1ab_0
  - rfc3339-validator=0.1.4=pyhd8ed1ab_0
  - rfc3986-validator=0.1.1=pyh9f0ad1d_0
  - rich=13.7.1=pyhd8ed1ab_0
  - rioxarray=0.15.7=pyhd8ed1ab_0
  - rpds-py=0.18.1=py311h5ecf98a_0
  - s2n=1.4.16=he19d79f_0
  - scikit-learn=1.5.0=py311he08f58d_1
  - scipy=1.14.0=py311h517d4fd_0
  - seaborn=0.13.2=hd8ed1ab_2
  - seaborn-base=0.13.2=pyhd8ed1ab_2
  - send2trash=1.8.3=pyh0d859eb_0
  - setuptools=70.1.1=pyhd8ed1ab_0
  - shapely=2.0.4=py311h0bed3d6_1
  - shellingham=1.5.4=pyhd8ed1ab_0
  - simpervisor=1.0.0=pyhd8ed1ab_0
  - sip=6.7.12=py311hb755f60_0
  - six=1.16.0=pyh6c4a22f_0
  - snappy=1.2.0=hdb0a2a9_1
  - sniffio=1.3.1=pyhd8ed1ab_0
  - snuggs=1.4.7=py_0
  - sortedcontainers=2.4.0=pyhd8ed1ab_0
  - soupsieve=2.5=pyhd8ed1ab_1
  - sparse=0.15.4=pyhd8ed1ab_0
  - spdlog=1.13.0=hd2e6256_0
  - sqlalchemy=2.0.31=py311h331c9d8_0
  - sqlite=3.46.0=h6d4b2fc_0
  - stack_data=0.6.2=pyhd8ed1ab_0
  - statsmodels=0.14.2=py311h18e1886_0
  - structlog=24.2.0=pyhd8ed1ab_0
  - tblib=3.0.0=pyhd8ed1ab_0
  - tenacity=8.4.2=pyhd8ed1ab_0
  - terminado=0.18.1=pyh0d859eb_0
  - threadpoolctl=3.5.0=pyhc1e730c_0
  - tiledb=2.24.1=h2aae180_1
  - tinycss2=1.3.0=pyhd8ed1ab_0
  - tk=8.6.13=noxft_h4845f30_101
  - toml=0.10.2=pyhd8ed1ab_0
  - tomli=2.0.1=pyhd8ed1ab_0
  - toolz=0.12.1=pyhd8ed1ab_0
  - tornado=6.4.1=py311h331c9d8_0
  - tqdm=4.66.4=pyhd8ed1ab_0
  - traitlets=5.14.3=pyhd8ed1ab_0
  - typer=0.12.3=pyhd8ed1ab_0
  - typer-slim=0.12.3=pyhd8ed1ab_0
  - typer-slim-standard=0.12.3=hd8ed1ab_0
  - types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0
  - typing-extensions=4.12.2=hd8ed1ab_0
  - typing_extensions=4.12.2=pyha770c72_0
  - typing_utils=0.1.0=pyhd8ed1ab_0
  - tzcode=2024a=h3f72095_0
  - tzdata=2024a=h0c530f3_0
  - udunits2=2.2.28=h40f5838_3
  - uri-template=1.3.0=pyhd8ed1ab_0
  - uriparser=0.9.8=hac33072_0
  - urllib3=2.2.2=pyhd8ed1ab_1
  - wcwidth=0.2.13=pyhd8ed1ab_0
  - webcolors=24.6.0=pyhd8ed1ab_0
  - webencodings=0.5.1=pyhd8ed1ab_2
  - websocket-client=1.8.0=pyhd8ed1ab_0
  - wheel=0.43.0=pyhd8ed1ab_1
  - xarray=2024.6.0=pyhd8ed1ab_1
  - xarraymannkendall=1.4.5=pyhd8ed1ab_0
  - xcb-util=0.4.1=hb711507_2
  - xcb-util-image=0.4.0=hb711507_2
  - xcb-util-keysyms=0.4.1=hb711507_0
  - xcb-util-renderutil=0.3.10=hb711507_0
  - xcb-util-wm=0.4.2=hb711507_0
  - xerces-c=3.2.5=hac6953d_0
  - xesmf=0.8.6=pyhd8ed1ab_0
  - xhistogram=0.3.2=pyhd8ed1ab_0
  - xkeyboard-config=2.42=h4ab18f5_0
  - xorg-fixesproto=5.0=h7f98852_1002
  - xorg-inputproto=2.3.2=h7f98852_1002
  - xorg-kbproto=1.0.7=h7f98852_1002
  - xorg-libice=1.1.1=hd590300_0
  - xorg-libsm=1.2.4=h7391055_0
  - xorg-libx11=1.8.9=hb711507_1
  - xorg-libxau=1.0.11=hd590300_0
  - xorg-libxdmcp=1.1.3=h7f98852_0
  - xorg-libxext=1.3.4=h0b41bf4_2
  - xorg-libxfixes=5.0.3=h7f98852_1004
  - xorg-libxi=1.7.10=h7f98852_0
  - xorg-libxrender=0.9.11=hd590300_0
  - xorg-renderproto=0.11.1=h7f98852_1002
  - xorg-xextproto=7.3.0=h0b41bf4_1003
  - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
  - xorg-xproto=7.0.31=h7f98852_1007
  - xskillscore=0.0.26=pyhd8ed1ab_0
  - xyzservices=2024.6.0=pyhd8ed1ab_0
  - xz=5.2.6=h166bdaf_0
  - yaml=0.2.5=h7f98852_2
  - yarl=1.9.4=py311h459d7ec_0
  - zarr=2.18.2=pyhd8ed1ab_0
  - zeromq=4.3.5=h75354e8_4
  - zict=3.0.0=pyhd8ed1ab_0
  - zipp=3.19.2=pyhd8ed1ab_0
  - zlib=1.3.1=h4ab18f5_1
  - zstandard=0.22.0=py311hb6f056b_1
  - zstd=1.5.6=ha6fb4c9_0
  - pip:
      - c3s-eqc-automatic-quality-control==0.1.2.dev112+g680c19a
      - cacholote==1.1.0
      - cads-toolbox==0.0.2b0
      - cgul==0.0.4
      - coucal==0.0.1b3
      - emohawk==0.0.4b0
      - kaleido==0.2.1
      - pymannkendall==1.4.3
prefix: /data/common/miniforge3/envs/wp5

Note: you may need to restart the kernel to use updated packages.

Anything else we need to know?

Provide permalink.

@malmans2 malmans2 linked a pull request Jul 23, 2024 that will close this issue
@malmans2
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Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/7efce25283a0d11c45c378b81d755349e2705b42/Satellite_ECVs/Land_Hydrology%26Cryosphere_ECVs/satellite_satellite-greenland-ice-sheet-velocity_trend-assessment_q01.ipynb

Please ensure that the notebook name is correct. If you need to make any modifications (e.g., addressing the reviewer's comments), please share the new version of the notebook here, and I will provide a new permalink. Let me know once the notebook is accepted, and I will merge the PR into the main branch.

PREVIEW

@malmans2
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Hi @yoniv1,

There has been some changes to the ECMWF libraries we are using under the hood and we need to make some modifications to this notebook. You are not going to see the issue on the old VM, but you will when we'll migrate to the new one.

The modification is quite simple and I already fixed the template. See: bopen/c3s-eqc-toolbox-template@12c94e9

To ease the transition, I also applied the changes to the notebook you submitted here. When you'll revise your notebook, please make sure you start from the version I'm attaching below:
satellite_satellite-greenland-ice-sheet-velocity_trend-assessment_q01.zip

Let me know if anything is not clear!

@malmans2
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Hi @yoniv1,

I've aligned the notebook with the latest template. If you check the preview, you'll notice some minor formatting edits.
If you need to review this notebook, please make sure to start from the latest version.

Here is the latest permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/521ce8c91e07cfd50f13564cb815a0a588c9ed26/Satellite_ECVs/Cryosphere/satellite_satellite-greenland-ice-sheet-velocity_trend-assessment_q01.ipynb

PREVIEW

You don't need to re-submit the permalink; the last one you used is still valid.

As far as I know, all notebooks now belong to separate workflows. Could you please send me the Workflow ID associated with this notebook?

Also, it was decided to split the Land Hydrology and Cryosphere folders, I assume this notebook belongs to the latter.

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