Updating to v0.9.95: Fixed perl issues

- Latest BioPerl and YAML from bioconda can now be used (packages `perl-bioperl-core` and `perl-yaml`


Former-commit-id: 324b81d

Author: edgardomortiz

captus/misc.py

@@ -577,19 +577,19 @@ def scipio_path_version(scipio_path):
 
 def bioperl_get_version():
     command = ["perl", "-MBio::Root::Version", "-e" , "print $Bio::Root::Version::VERSION"]
-    process = subprocess.Popen(command, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+    process = subprocess.Popen(command, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
     try:
-        version = float(process.communicate()[0].decode())
+        version = process.communicate()[0].decode()
         return "BioPerl", str(version), "OK"
     except ValueError:
         return "BioPerl", "", "not found"
 
 
 def yaml_perl_get_version():
     command = ["perl", "-MYAML", "-e" , "print $YAML::VERSION"]
-    process = subprocess.Popen(command, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+    process = subprocess.Popen(command, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
     try:
-        version = float(process.communicate()[0].decode())
+        version = process.communicate()[0].decode()
         return "YAML", str(version), "OK"
     except ValueError:
         return "YAML", "", "not found"

captus/version.py

@@ -14,4 +14,4 @@
 not, see <http://www.gnu.org/licenses/>.
 """
 
-__version__ = '0.9.94'
+__version__ = '0.9.95'

recipe/meta.yaml

@@ -33,7 +33,8 @@ requirements:
     - mmseqs2
     - muscle >=5
     - pandas
-    - perl-bioperl-core =1.007002
+    - perl-bioperl-core
+    - perl-yaml
     - pigz
     - plotly
     - tqdm