diff --git a/Julia/README.Rmd b/Julia/README.Rmd index 251f2650..4da110da 100644 --- a/Julia/README.Rmd +++ b/Julia/README.Rmd @@ -352,8 +352,8 @@ This basic workflow is highly customisable. You have the flexibility to define s To cite `patter` in publications, please use: * Lavender, E. et al. (2023). An integrative modelling framework for passive acoustic telemetry. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.14193 -* Lavender, E. et al. (in prep). Particle filters for animal movement modelling in autonomous receiver networks. -* Lavender, E. et al. (in prep). Particle filters for animal tracking in `R` and `Julia`. +* Lavender, E. et al. (in prep). Particle algorithms for animal movement modelling in autonomous receiver networks. +* Lavender, E. et al. (in prep). Particle algorithms for animal tracking in `R` and `Julia`. https://doi.org/10.1101/2024.07.30.605733 * Lavender, E. et al. (in prep). Particle filtering reveals patterns of space use in a Critically Endangered elasmobranch. --- diff --git a/Julia/docs/figures/README-unnamed-chunk-13-2.png b/Julia/docs/figures/README-unnamed-chunk-13-2.png index 3c525918..caf4d19a 100644 Binary files a/Julia/docs/figures/README-unnamed-chunk-13-2.png and b/Julia/docs/figures/README-unnamed-chunk-13-2.png differ diff --git a/README.Rmd b/README.Rmd index c14ae477..86fafdd7 100644 --- a/README.Rmd +++ b/README.Rmd @@ -449,9 +449,9 @@ options(op) To cite `patter` in publications, please use: * Lavender, E. et al. (2023). An integrative modelling framework for passive acoustic telemetry. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.14193 -* Lavender, E. et al. (in prep). Particle filters for animal movement modelling in autonomous receiver networks. -* Lavender, E. et al. (in prep). Particle filters for animal tracking in `R` and `Julia`. -* Lavender, E. et al. (in prep). Particle filtering reveals patterns of space use in a Critically Endangered elasmobranch. +* Lavender, E. et al. (in prep). Particle algorithms for animal movement modelling in autonomous receiver networks. +* Lavender, E. et al. (in prep). Particle algorithms for animal tracking in `R` and `Julia`. https://doi.org/10.1101/2024.07.30.605733 +* Lavender, E. et al. (in prep). Particle algorithms reveal patterns of space use in a Critically Endangered elasmobranch. --- diff --git a/README.md b/README.md index cccbc492..5173a7c6 100644 --- a/README.md +++ b/README.md @@ -379,9 +379,6 @@ essential packages: ``` r library(patter) #> This is {patter} v.1.0.0.9000. For an overview, see `?patter`. For support, contact edward.lavender@eawag.ch. -``` - -``` r library(data.table) library(dtplyr) library(dplyr, warn.conflicts = FALSE) @@ -523,9 +520,6 @@ head(fwd$states) #> 4: 1 4 2016-03-17 01:56:00 44.46762 709390.0 6252794 #> 5: 1 5 2016-03-17 01:58:00 60.64737 708976.4 6252849 #> 6: 1 6 2016-03-17 02:00:00 55.42853 709437.9 6253395 -``` - -``` r # Backward run args$.direction <- "backward" @@ -555,9 +549,6 @@ ud <- map_dens(.map = map, .coord = smo$states, sigma = spatstat.explore::bw.diggle)$ud #> Observation window is gridded. -``` - -``` r # Add home range map_hr_home(ud, .add = TRUE) @@ -603,11 +594,11 @@ To cite `patter` in publications, please use: - Lavender, E. et al. (2023). An integrative modelling framework for passive acoustic telemetry. Methods in Ecology and Evolution. -- Lavender, E. et al. (in prep). Particle filters for animal movement +- Lavender, E. et al. (in prep). Particle algorithms for animal movement modelling in autonomous receiver networks. -- Lavender, E. et al. (in prep). Particle filters for animal tracking in - `R` and `Julia`. -- Lavender, E. et al. (in prep). Particle filtering reveals patterns of +- Lavender, E. et al. (in prep). Particle algorithms for animal tracking + in `R` and `Julia`. +- Lavender, E. et al. (in prep). Particle algorithms reveal patterns of space use in a Critically Endangered elasmobranch. ------------------------------------------------------------------------