diff --git a/.github/workflows/conda_build.yml b/.github/workflows/conda_build.yml index d48af33c..93c23178 100644 --- a/.github/workflows/conda_build.yml +++ b/.github/workflows/conda_build.yml @@ -28,7 +28,7 @@ jobs: run: | conda config --add channels bioconda conda config --add channels conda-forge - conda install -c conda-forge gcc_linux-64 + conda install -c conda-forge gxx_linux-64 conda install conda-build conda-verify conda build . # This step installs conda-build and then uses it to build your Conda package. diff --git a/CNEFinder/Makefile b/CNEFinder/Makefile index 44b4c256..e3e4c253 100644 --- a/CNEFinder/Makefile +++ b/CNEFinder/Makefile @@ -1,6 +1,6 @@ MF= Makefile -CC= g++ +CC= x86_64-conda-linux-gnu-g++ CFLAGS= -g -fopenmp -D_USE_OMP -msse4.2 -O3 -fomit-frame-pointer -funroll-loops diff --git a/meta.yaml b/meta.yaml index cf84bd7d..8e5ef417 100644 --- a/meta.yaml +++ b/meta.yaml @@ -15,11 +15,11 @@ build: requirements: build: - python=3.8.* - - conda-forge::gcc_linux-64 + - conda-forge::gxx_linux-64 - make run: - python=3.8.* # Add your runtime dependencies here - - conda-forge::gcc_linux-64 + - conda-forge::gxx_linux-64 - mummer4=4.0.0 - bedtools=2.30.0 - sourmash>=4.6