Tests.yml

name: Tests
on:
  push:
    branches:
      - master
      - main
  pull_request:
    branches:
      - master
      - main
  workflow_dispatch:

  schedule:
    - cron: '0 0 * * 0'

env:
  PACKAGE_NAME: pymer4

defaults:
  run:
    # login shell to source the conda hook in .bash_profile
    shell:
      bash -l {0}

jobs:
  ci:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: true
      matrix:
        py_ver: [3.8, 3.9, '3.10', 3.11]
        os: [ubuntu-latest]

    steps:

      # ------------------------------------------------------------
      # Step up miniconda
      - name: Download Miniconda
        uses: conda-incubator/setup-miniconda@059455a698430d8b68fa317268fa2e3da3492a98
        with:
          miniconda-version: "latest"
          python-version: ${{ matrix.py_ver }}

      # ------------------------------------------------------------
      # Get code
      - name: Checkout code
        uses: actions/checkout@v2

      # ------------------------------------------------------------
      # Setup conda build environment and build package
      # env defined here are just for convenience when writing bash commands
      - name: Install package
        env:
          PY_VER: ${{ matrix.py_ver }}
        run: |
          conda config --set always_yes yes --set changeps1 no
          conda create -n pkg_test -c conda-forge python=$PY_VER 'r-lmerTest' 'r-emmeans' 'rpy2'

          conda activate pkg_test
          pip install -r requirements-dev.txt
          pip install .

      # ------------------------------------------------------------
      # Run tests
      - name: Test installation and Run Test Suite
        run: |
          conda activate pkg_test
          python -c "from pymer4.test_install import test_install; test_install()"
          black --version
          black --check --verbose .
          pytest pymer4/tests

      # ------------------------------------------------------------
      # Build docs
      - name: Build Docs
        run: |
          conda activate pkg_test
          cd docs && make clean && make html