_pkgdown.yml

url: https://github.com/emeyers/NDTr

title: NeuroDecodeR

template:
  params:
    bootswatch: sandstone

reference:
- title: "Datasources"
  contents:
  - "`ds_basic`"
  - "`ds_generalization`"
  
- title: "Feature preprocessors"
  contents:
  - "`fp_select_k_features`"
  - "`fp_zscore`"
  
- title: "Classifiers"
  contents: 
  - "`cl_max_correlation`"
  - "`cl_poisson_naive_bayes`"
  - "`cl_svm`"

- title: "Cross-validators"
  contents: 
  - "`cv_standard`"
  - "`run_decoding.cv_standard`"
  - "`get_parameters.cv_standard`"  

- title: "Result Metrics"
  contents: 
  - "`rm_main_results`"
  - "`rm_confusion_matrix`"
  
- title: "Plot functions"
  contents:
  - "`plot.raster_data`"
  - "`plot.label_repetition`"
  - "`plot.rm_main_results`"
  - "`plot_main_results`"
  - "`plot.rm_confusion_matrix`"

- title: "Save and log results"
  contents: 
  - "`log_save_results`"
  - "`log_check_results_already_exist`"
  - "`log_load_results_from_result_name`"
  - "`log_load_results_from_params`"

- title: "Tools"
  contents: 
  - "`create_binned_data`"
  - "`convert_matlab_raster_data`"
  - "`get_num_label_repetitions`"
  - "`get_siteIDs_with_k_label_repetitions`"
  - "`get_num_label_repetitions_each_site`"
  - "`read_raster_data`"
  - "`test_valid_raster_format`"


navbar:
  title: "NeuroDecodeR"
  type: inverse
  left:
    - text: "Home"
      href: "index.html"
    
    - text: "Tutorials"
      menu:
          - text: "Introductory tutorial"
            href: "articles/introduction_tutorial.html"
          - text: "Generalization analysis tutorial"
            href: "articles/generalization_tutorial.html"

    - text: "Reference"
      href: "reference/index.html"
    
    - text: "Documentation"
      menu:
          - text: "Data formats"
            href: "articles/data_formats.html"
          - text: "Datasets"
            href: "articles/datasets.html"
          - text: "NDR object specification"
            href: "articles/NDR_object_specification.html"