test-model.yml

name: Model Test on push

on:
  push: 
    branches: ['main']
  workflow_dispatch:

jobs:
  test:
    if: github.repository != 'ersilia-os/eos-template'
    runs-on: ubuntu-latest
    steps:
      - name: Checkout persist credentials
        uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # pin@v3.5.2
        with:
          persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token
          fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
          lfs: 'true'
      
      - name: Add conda to system path
        run: echo $CONDA/bin >> $GITHUB_PATH
      
      - name: Source conda
        run: source $CONDA/etc/profile.d/conda.sh

      - name: Set Python to 3.10.10
        run:
         conda install -y python=3.10.10 
         
      - name: Install dependencies
        run: |
          source activate
          conda init
          conda install git-lfs -c conda-forge
          git-lfs install
          conda install gh -c conda-forge

      - name: Install ersilia
        run: |
          source activate
          python --version
          echo "After conda init"
          conda init
          python -m pip install git+https://github.com/ersilia-os/ersilia.git
  
      - name: Update metadata to AirTable
        id: update-metadata-to-airtable
        env:
          USER_NAME: ${{ github.repository_owner }}
          BRANCH: "main"
          REPO_NAME: ${{ github.event.repository.name }}
          AIRTABLE_API_KEY: ${{ secrets.AIRTABLE_API_KEY }}
        run: |
          source activate
          echo "Updating metadata to AirTable looking at owner: $USER_NAME"
          wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/update_metadata_to_airtable.py
          python3 update_metadata_to_airtable.py $USER_NAME $REPO_NAME $BRANCH $AIRTABLE_API_KEY
          rm update_metadata_to_airtable.py

      - name: Update README file
        id: update-readme-file
        env:
          MODEL_ID: ${{ github.event.repository.name }}
        run: |
          source activate
          echo "Updating README file with AirTable metadata for model: $MODEL_ID"
          wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/update_readme_from_airtable.py
          python3 update_readme_from_airtable.py $MODEL_ID .
          rm update_readme_from_airtable.py
          less README.md

      - name: Commit and push changes done to the README file
        uses: actions-js/push@156f2b10c3aa000c44dbe75ea7018f32ae999772 # pin@v1.4
        with:
          author_name: "ersilia-bot"
          author_email: "ersilia-bot@users.noreply.github.com"
          message: "updating readme [skip ci]"
          repository: "ersilia-os/${{ github.event.repository.name }}"
          github_token: ${{ secrets.GITHUB_TOKEN }}
          amend: true
          force: true
      
      - name: Predict output
        env:
          MODEL_ID: ${{ github.event.repository.name }}
        run: |
          source activate
          echo "Sample model id selected: $MODEL_ID"
          ersilia -v fetch $MODEL_ID --repo_path .
          ersilia -v serve $MODEL_ID
          ersilia sample -n 5 -f input.csv
          ersilia -v api -i input.csv
          ersilia close
          
      - name: Upload log output
        uses: actions/upload-artifact@83fd05a356d7e2593de66fc9913b3002723633cb #pin v3.1.1
        with:
          name: debug-logs
          retention-days: 1
          path: /home/runner/eos/console.log
          
      - name: Shuffle assignees
        id: shuffle
        run: |
          export assignees=$(echo "${{ vars.assignees }}" | awk 'BEGIN {FS=","}; {srand();split($0,a,FS); print a[int(rand()*NF+1)]}')
          echo "$assignees" >> $GITHUB_STEP_SUMMARY
          echo "shuffled_assignee=$assignees" >> $GITHUB_OUTPUT
          echo "shuffled_assignee=$assignees" >> $GITHUB_ENV

      - name: Check for existing issue
        id: check_issue
        run: |
          gh auth login --with-token <<< ${{ secrets.GITHUB_TOKEN }}
          issue_number=$(gh issue list --limit 100 --search "${{ vars.test_issue_title }}" --json number --jq '.[0].number')
          echo "::set-output name=issue_number::$issue_number"
   
      - name: Create a Test issue
        uses: actions-ecosystem/action-create-issue@b63bc2bbacb6a838dfe4a9f70da6665ae0962a49
        id: create_issue 
        with:
          github_token: ${{ secrets.github_token }}
          title: ${{ vars.test_issue_title }}
          assignees: |
            ${{ steps.shuffle.outputs.shuffled_assignee }}
          body: |
            This model is ready for testing. If you are assigned to this issue, please try it out using the CLI, Google Colab and DockerHub and let us know if it works!
          labels: |
            test
        if: steps.check_issue.outputs.issue_number == ''