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- Clean up docstrings - More verbose error message when test data folder is not found - Flake8 + Black this file
gmaze
added a commit
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Sep 25, 2024
commit 62ba4cb9aae0cd2ef71b13e4b585a9d0d19da53c
Merge: 919484e8 ce6fed99
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 13:50:16 2024 +0200
Merge pull request #389 from euroargodev/other-major-breaking-refactoring
Implement other than bgc-2024 branch major breaking refactoring for major release v1.0.0
commit ce6fed9992d1692b0a4e698623a1ee469b75f386
Merge: fa05fa78 919484e8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 12:08:02 2024 +0200
Merge branch 'master' into other-major-breaking-refactoring
commit fa05fa78446069cf2c483f036cafc5eecf4f9066
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 12:07:02 2024 +0200
Delete test_deprecated.py
commit 919484e86ef57c8ed3a8009a1b9d6ed8e1104684
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 11:37:21 2024 +0200
Fix ci tests env
fix error libmamba Could not solve for environment specs
The following packages are incompatible
├─ fsspec 2024.9.0* is requested and can be installed;
└─ s3fs 2024.6.1* is not installable because it requires
└─ fsspec 2024.6.1 , which conflicts with any installable versions previously reported.
critical libmamba Could not solve for environment specs
commit 0dc9834dbfe770eed7467908fa9bad18d0559ab6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 11:31:21 2024 +0200
Add upstream tests with python 3.11 and 3.12
commit a1aedc5be403a91374a5bc724419ed744de77728
Merge: 747ba134 549d8c31
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 11:25:09 2024 +0200
Merge branch 'master' into other-major-breaking-refactoring
commit 549d8c3167b69259819e0bcc2cee92afe133f236
Merge: 1e79ec08 2d4785d7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 11:20:42 2024 +0200
Merge pull request #356 from euroargodev/bgc-2024
Work on BGC from 2024 LOV visit
commit 2d4785d79cc5feead2d75271953e501cb79eb43e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 10:30:17 2024 +0200
Remove 45mins timeout for CI tests
commit 17970376b346a1ab2ce0144a5cdd1193079d96a9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 08:03:22 2024 +0200
Update CI tests data
include standard and research mode for erddap BGC
commit 82c20c879868efebb60e2239347ac4a40f877fdb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 07:44:50 2024 +0200
Update CI tests data
commit f7ebc219517e1dba28df6ecb1ba3ddfbdaa6616a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 07:39:34 2024 +0200
Update test_deprecated.py
commit 51355c3bdf4d946618c437fa8446898241bbf137
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 24 12:08:05 2024 +0200
update CI tests data
commit 809adc988bbb219000d0353103a1e6fd9703e4f0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 24 10:37:20 2024 +0200
Update create_json_assets
commit 2ff193f1e8ef464027482ea8b7ca83666897be39
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 24 10:37:15 2024 +0200
Update argovis_data.py
make sure argovis is only using a single filestore
commit a73f72725fa2709691f669790dc092c3434f227e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 24 10:36:53 2024 +0200
Update CI tests data
commit cf41ba4146eeb34b778f6f66cb59a7d890e65f00
Merge: 4681d558 1e79ec08
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 23 14:59:03 2024 +0200
Merge branch 'master' into bgc-2024
commit 4681d5587d7a2d697ae1c0bbf21d991c85938418
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 23 14:57:32 2024 +0200
Clear CI tests for easier merge with master [skip-ci]
commit 1e79ec087d5e836e3d25eec644ba75665c6bd0f1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 23 14:56:59 2024 +0200
Clear CI tests data for easier merge [skip-ci]
commit c9de8b949482e82d6753f3eb70554b95d15dbc4b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 23 14:54:43 2024 +0200
Clear CI tests data before merge
commit a21a644eb449bb8a400751927603034a58d35972
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 23 09:56:26 2024 +0200
Update whats-new.rst
commit fe8b91cd12992743a6765ea57f373398d72f3efd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 15:38:26 2024 +0200
Update requirements.txt
commit 4ae5aab1f2e29403f59ab944ee3270f0dabf1086
Merge: 0f5a7542 b135bfaa
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 15:36:58 2024 +0200
Merge pull request #394 from euroargodev/releasev0.1.17
Prepare for v0.1.17 Bat Release 🦇
commit b135bfaae15fb97ce9eaa9204f57e187a0cd0a6f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 14:16:32 2024 +0200
Update dev env definitions
commit 0f5a7542d72fd8af815403630f5d7ef57c6f73dd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:54:21 2024 +0200
Update HOW_TO_RELEASE.md [skip-ci]
commit 4bc625ef49b781874328dd40d75e897f31215160
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:49:08 2024 +0200
Flake8
commit 34d1a46d2bac79d52678450709d077bfd6733e0d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:45:15 2024 +0200
codespell
commit 62590119e30b4dd477c27865ea437ff5125630aa
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:42:32 2024 +0200
Fix CI tests data update
commit c5ab62276f4859bdb1ad4ad528e0e40ca8b32df4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:36:15 2024 +0200
Update cheatsheet.rst
commit cb66217945ba3d698e4db600eefe6d3f1a712b71
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:28:25 2024 +0200
Update cheatsheet PDF
commit 10ff2cfece19fe156a87f12bf01a62177b796780
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:50:15 2024 +0200
Update CI tests data
commit ec0b14cca73cd53ce7761411b0d8a32c889af3ce
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:48:41 2024 +0200
Update HOW_TO_RELEASE.md [skip-ci]
commit e2df7895b90f39b7202ab544f4f87911fed46b8a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:28:55 2024 +0200
Update static assets
commit cffefc01ab57a8f94ba3c7e6482b95e7ee008369
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:28:24 2024 +0200
Update reference_tables.py
commit 6cf264492f7c61f43e750e401fd024b695d4d900
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:07:15 2024 +0200
Update whats-new.rst
commit eb7e689fcd6e1fde88ebbe4059f845cfa902ab45
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:07:12 2024 +0200
Update fetchers.py
commit d8121d8802d2f58c4397d00a649ff5f5299bcc6e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 10:58:12 2024 +0200
Update HOW_TO_RELEASE.md [skip-ci]
commit 88ff363c91fd5d4e7c3fe5549f9028def1860bf7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 10:34:20 2024 +0200
Move to v0.1.17, to Beta
commit e48ab550d339a48e40858485ef9f876514e7f58a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 09:47:51 2024 +0200
Update xarray.py
don't anticipate too much on the upcoming filter_data_mode replacement
commit 29a5cfcd5be63f230876abd0abb27c8e071c61e2
Merge: 5a310570 f3b0a56c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 09:45:45 2024 +0200
Merge pull request #388 from euroargodev/deprec-before-major
Introduces deprecation warnings before major v1.0.0 release
commit f3b0a56c5099995173cfa605969427c2f5bc0aac
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 08:56:53 2024 +0200
Better deprecation introduction
commit 5a3105708f6c1494e3e99ca88651487d7cac3302
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 19 14:15:02 2024 +0200
Pin erddapy for python < 3.10
See https://github.com/ioos/erddapy/issues/359
commit 747ba134d797683bafa275da73c8e97c9fa22707
Merge: 37f24952 0095fe60
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 18 15:33:08 2024 +0200
Merge branch 'master' into other-major-breaking-refactoring
commit 37f24952dec4c23d12ced7b50331b1a9caa28e7b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 18 15:32:46 2024 +0200
Update monitored_threadpool.py
commit 6d9be491158f2da8335031891ebf2e85402f452b
Merge: 62ece427 0095fe60
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 18 15:30:38 2024 +0200
Merge branch 'master' into bgc-2024
commit 0095fe606796185e48479c48d3ea36a94bb0d685
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 17 11:03:34 2024 +0200
Allows for low level http fetching errors to be ignored
- usefull for a Dask client as a parallel option
commit 26693016c881754995f4b848feaae691f1643a4b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:46:38 2024 +0200
[skip-ci]
commit 87a996d351e32a377f28cc4b8cd5b6284fd3fb15
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:34:15 2024 +0200
Update options.py
improve doctrings
commit e87afe1cc0e453a757f920961c26c1572824d466
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:32:06 2024 +0200
Create test_deprecated.py
Ensure we're having warnings for deprecations
commit c319d0ae3af5eb18a9a4fecebe884430ba102036
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:31:32 2024 +0200
Update xarray.py
fix deprecation warning
commit 19daad3bb8554b31554c0824ef93e01810f11f3f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:31:13 2024 +0200
New deprecation for option 'ftp' replaced by 'gdac'
commit c8906029601cbf5ae35da9ec52e50977462fcad2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:30:32 2024 +0200
introduce new "OptionDeprecatedWarning"
commit c6bb528b1c037cb01f7a2c446e594edfec23d734
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 12 16:15:21 2024 +0200
Update static assets
commit aa61927728d4f2846f9f256bfddb29c262d590c1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 12 10:22:47 2024 +0200
Update argovis_data.py
removing numpy datetime64 utc warning
commit a62dc9d0f8bf1e8a9889ad85b219c64133df9cbc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 12 10:22:32 2024 +0200
Update test_xarray_accessor.py
commit 46a658615931c226af58443fc491b8483fe629cb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 12 10:22:25 2024 +0200
more ftp to gdac fixing
commit a7557049d8428ab32e214bea7ff1f5a96eac6a63
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 11 14:20:02 2024 +0200
Update test_fetchers_facade_data.py
commit 86f2edd18c8a93e0438b3d62ecd75c75bb096ad6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 11 11:20:06 2024 +0200
More 'ftp' to 'gdac' refactoring
commit 91310fcd1a4315621902a483caee494fd2ebff5f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 16:37:48 2024 +0200
Update checkers.py
commit 1b1c35cb9ac39e422810836c6d6e9d49688b06c2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 16:32:20 2024 +0200
Refactor "FtpPathError" into "GdacPathError"
commit 623aec8a7727fe95e2de90f950910230e8abb504
Merge: 691c4876 62ece427
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 13:09:23 2024 +0200
Merge branch 'bgc-2024' into other-major-breaking-refactoring
commit 691c48762533b0bb4dd860c7c255a2510714b0c9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 13:08:01 2024 +0200
More 'ftp' to 'gdac' refactoring in documentation
commit ea0dc614e4f9a8e53040157c4856dac8661490cb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 13:00:54 2024 +0200
More 'ftp' to 'gdac' refactoring
commit 07bc71df654b0b0e3ee6f6c4c1c214ee04a55747
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:48:30 2024 +0200
Refactor "ftp" vocab to "gdac"
- option "ftp" renamed "gdac"
- "FTPArgoDataFetcher" renamed "GDACArgoDataFetcher"
- GDAC fetchers argument "ftp" renamed "gdac"
- "validate_ftp" renamed "validate_gdac" in options.py
commit e2c25fc5449e7bf847272e3b0f2c561fa7e0b101
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:45:17 2024 +0200
upgrade pinned s3fs
commit c379d550646df56c80df092e9c569b6b09f3abf0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:26:35 2024 +0200
Refactor "gdacftp_*" modules into "gdac_*"
commit 62ece427f01a73bb98d0eeb7dd92f71567f33376
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:23:23 2024 +0200
misc
commit 7d103b1c045d08b55257ac79db9f93e7ba74ea6d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:13:48 2024 +0200
Update pytest.ini
commit 3875306c19b64645dae4369131717ce67c600786
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:13:18 2024 +0200
s3fs > 2023.12.12
/home/runner/micromamba/envs/argopy-tests/lib/python3.10/site-packages/fsspec/registry.py:279: UserWarning: Your installed version of s3fs is very old and known to cause severe performance issues, see also https://github.com/dask/dask/issues/10276
commit c812f0c4e2767bb5fc4cc8bef73a3f80413589a4
Merge: 942022db 56690321
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:58:30 2024 +0200
Merge branch 'bgc-2024' into other-major-breaking-refactoring
commit 56690321c1037f1e2dbb8bf3051f5c52c2d06f18
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:57:19 2024 +0200
update doc [skip-ci]
commit d40b7690215791c14adce02780975e424d5e40cb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:34:38 2024 +0200
Update test data
commit dc448c8f1874afc99dc2bc63bb1718a63ff4982c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:34:26 2024 +0200
improve logs
commit 245e4b0df08b1ed317058137f09cad82b5dfbdd8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:33:57 2024 +0200
Update xarray.py
- fix bugs whereby list of parameters was not created when the list of params was in the args
commit 4faa1aa72de6e4e7d0a02efc54ace0f1c80d830b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:33:23 2024 +0200
Update format.py
- fix bug whereby pressure constraint was on pres_adjusted rather than pres for researcu user mode erddap uri
commit 2eec9a6423ee13daba86766cc12f24cdcf3cbcfc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 10:06:38 2024 +0200
Update User mode documentation page
- describe BGC support for expert and research user modes
commit e72cb63d293d69277e74d8f1899388287fbccfb1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 10:05:05 2024 +0200
fix bugs in variable and parameter lists usage and definition
- list_standard_variables now return list for phy or bgc dataset
- improve consistency of the "variable" vs "parameter" terms usage
- fix bug whereby transforming the dataset according to data mode was not allowing delayed mode only and adjusted only variables in a dataset
- improve docstrings
- limit use of explicit list of parameters, fall back on using the utility list functions
commit 925c1559cbe630d5076cf62d4ac86683420a998d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 09:59:00 2024 +0200
Update erddap_data.py
- fix bug whereby user mode was not passed to downstream instances when URI was split
commit 942022db6ae3053630f5dfbb437c99ae2c618cec
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 6 09:44:58 2024 +0200
Update fetchers.py
commit 868188754ca7171b2b2a08cd13f961fe94ec9dd9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 6 09:35:58 2024 +0200
Update utils.py
commit d76a1a52d67a217dec584a3d7375457f45f00c08
Merge: 36fca9e4 09d26995
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 6 09:32:14 2024 +0200
Merge branch 'bgc-2024' into other-major-breaking-refactoring
commit 09d269956f151d020b65e923c2f60854b87c4dd1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 16:40:16 2024 +0200
Update utils.py
commit a484e301bb7e8f7ae18837d66021c1fbe52f0469
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 16:36:16 2024 +0200
Improve docstrings
- and refactored argo_accessor into _argo
commit f81842c751fcd62e88f6d77f73a6d29993963c9d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 16:35:25 2024 +0200
Add missing test data
commit 29052b3b4ad629bb0e88ff11dfb87e407d87fd75
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 15:56:11 2024 +0200
Update xarray.py
- fix bug whereby dataset without PSAL would raise errors with filters assuming all core parameters
commit 9affe784751086cd90dd7410101cf50803454eaf
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 15:55:34 2024 +0200
Refactored register_argodataset_accessor into register_argo_accessor
commit 58a8258a2b4b3116c99a9d8a972ebca0aa610b33
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 14:52:59 2024 +0200
Update test data
commit eac13c5f281a502636f63edea46d67c26dc12e84
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 14:52:45 2024 +0200
improve docstrings
commit a7219991ed267f4fe795517952b7233c85aff093
Merge: 62ecdabc 2f2e2dc8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 09:25:09 2024 +0200
Merge branch 'master' into bgc-2024
commit 850adf1cbf13f4df06b74d813ffe5cc2880a4e9d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 11:14:10 2024 +0200
Deprec for 'dataset' option replaced by 'ds'
commit 36fca9e4371f83adad73c0602e7f60a6fb717001
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:47:45 2024 +0200
Refactor option "dataset" into "ds"
commit 4070159236db17030c2e6234226b09cb33bb24fc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:35:38 2024 +0200
Refactor option "dataset" into "ds"
- for consistency with fetcher argument name "ds"
commit 62ecdabceea1a4a710874b0d270ca020fee8a649
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:26:31 2024 +0200
Remove filter_data_mode_new
This assume that this branch will be merged for the v1.0.0
commit 1371625cdba6ad85493353c51c9413b7d02f52b6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:12:43 2024 +0200
Update whats-new.rst
commit a988d797e5c5b0bc979dadeb710fb2dc4eab6f07
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:10:43 2024 +0200
Update xarray.py
commit acc789e025a18f5a1d8b5e03629e18f51edb6117
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:08:07 2024 +0200
Update xarray.py
commit 2f2e2dc884cf5d3b39aa38339e1027260fc4c60d
Merge: 7f3bbb42 bb18f4b0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 09:21:03 2024 +0200
Merge pull request #384 from euroargodev/dependabot/pip/ipython-lte-8.27.0
pip prod(deps): update ipython requirement from <=8.26.0 to <=8.27.0
merging because this only affect the documentation that seems to build ok !
commit 7f3bbb42eb5ccf4082104cda6b52f0d6d770dc0c
Merge: f843a75f 47629de3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 08:07:20 2024 +0200
Merge pull request #383 from euroargodev/argovis-use-mock
Refactor Argovis CI tests to use mock server
commit 47629de3af533f9f5f34ae86e030818a473a3fb1
Merge: 85b86d7c f843a75f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 14:18:17 2024 +0200
Merge branch 'master' into argovis-use-mock
commit 85b86d7c10c7ba6dd3421d559d9f0acb31ce477e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 14:14:40 2024 +0200
Update whats-new.rst
commit f843a75ff2eb7f7434c31d63c6c131db260edbb0
Merge: 5f46ae5c 2cb95931
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 14:12:26 2024 +0200
Merge pull request #382 from euroargodev/test-data-help
Update mocked_http.py
commit c28aab81ad69af34fc897421bec4fa3aacec8776
Merge: ad756412 5f46ae5c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 14:08:02 2024 +0200
Merge branch 'master' into argovis-use-mock
commit 5f46ae5c1318383e37ef1fbba6d60766e21100ea
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 14:06:25 2024 +0200
[skip-ci]
commit ad756412305252f098b9da0f26035d304be833aa
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 13:29:37 2024 +0200
Update citests_httpdata_manager
- fix codeQL
commit 6e74d497838627d2a7f3aeaefb6774243c53a1d6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 13:24:53 2024 +0200
Update cheat sheet PDF
commit 4c46bc8c2ff815ca31e8bfc4756eddcf4af9cc93
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 13:24:42 2024 +0200
Update xarray.py
- fix deprec warning
commit 2fdc1850940a4bbf04424239357e34f15c5d0c2b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 13:24:28 2024 +0200
Update documentation
- Removed "Comparison of performances" (way too slow, not useful)
- New page for cheat sheet
- Add icons below logo tor quick helpers
- fix some errors in the docs
- Update contributing
- Add sections to what's new to improve TOC
commit 6f681c082677549c549483649569f6e3af863edc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 2 08:54:56 2024 +0200
[skip-ci]
commit 5eb412bd758e5ebbe2d4666e23b039c68753b4ee
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 2 08:35:15 2024 +0200
Add missing test data
commit bb18f4b061211ed3f44e955b5994cc7b63661bc2
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Sep 2 04:29:45 2024 +0000
pip prod(deps): update ipython requirement from <=8.26.0 to <=8.27.0
Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](https://github.com/ipython/ipython/compare/5.0.0...8.27.0)
---
updated-dependencies:
- dependency-name: ipython
dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
commit cc6657b4270174dac63d3148380df08c4f5d88cc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 16:23:19 2024 +0200
Fix argovis to use mock server data
commit 564eb8c644c4d110e43aeafa71c91efc84663746
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 16:22:30 2024 +0200
update test data for argovis
commit 628d425e0922ec331b3ebf4b03c61c272027cf21
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 15:26:34 2024 +0200
Update fetchers.py
raises OptionValueError when trying to fetch argovis data in expert or research mode
commit 0264174fe86d852b7b264a6ac3d0a22bda0c19ed
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 15:25:58 2024 +0200
update docstrings
commit 2b0e30826a3559ed59f29b0e603558bcfbe1a1c6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 15:25:36 2024 +0200
Update test_fetchers_data_argovis.py
- update argovis fetcher CI tests design
commit a1f9792acfe2a59bd459e6b0a5217d4c89230f84
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 14:58:58 2024 +0200
Update utils.py
commit 36a32381eed464e670288bbfeaa4ceb3bed22938
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 14:58:51 2024 +0200
Update xarray.py
fix FutureWarning
commit 49b29c1cd8bec78362102f0d957a8e76417ded52
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 12:02:30 2024 +0200
update cheatsheet to v0.1.16 [skip-ci]
commit 2b54749f84162f75a09ca943ca81942c716c79ab
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 09:52:31 2024 +0200
[skip-ci]
commit 8341ecadb313280dfa19925764f2ff43bf7edc4d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 09:47:40 2024 +0200
Update cheatsheet PDF [skip-ci]
commit 76da448555457d7ec99fd5fcd5168ca2b601dcbf
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 28 15:56:23 2024 +0200
Update mocked_http.py
commit 2cb95931eb0850362420f2f57e75a872f433faab
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 28 15:40:49 2024 +0200
Update mocked_http.py
- Clean up docstrings
- More verbose error message when test data folder is not found
- Flake8 + Black this file
commit da3beaa342213bb1658a7a63638e7ec9fe094843
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 27 10:04:30 2024 +0200
Misc updates post release [skip-ci]
commit 97c8e46ac0e35540ab3cb17173a4e112630f5844
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 16:23:52 2024 +0200
[skip-ci]
commit 7537d11fa9a7b5d0297ba12f5d5ca66e36152793
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 16:01:59 2024 +0200
[skip-ci]
commit f2d654c1c2f7c67e457f30115bd880eeff49581b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 15:55:53 2024 +0200
Update argo_documentation.py
commit 832dbbad099708699191e702b1253ba30ae28832
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 14:50:31 2024 +0200
Update whats-new.rst
commit 2aed4b43c9ecc26832577d180b588fab7fad9cb4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 14:50:23 2024 +0200
Update fetchers.py
commit f60b28d82afbb39e5e20401e21167caed3cda98c
Merge: b8857dba e09eeb20
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 14:49:03 2024 +0200
Merge pull request #379 from euroargodev/releasev0.1.16
Prepare for v0.1.16 Flamingos Release 🦩
commit e09eeb20176703a9393bb811a359204b00182acc
Merge: 17e2b52a b8857dba
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 14:34:41 2024 +0200
Merge branch 'master' into releasev0.1.16
commit 17e2b52a9f642f6bc161bfb7daeed65986133669
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 14:31:29 2024 +0200
Pin xarray < 2024.3
commit b8857dbabfa0b4a96f111f75cb894e8068ed2944
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 14:30:05 2024 +0200
Pin xarray<2024.3
commit 97a20e7d4af1e0c6cacbd8158504c01b186873f6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 14:26:09 2024 +0200
pin xarray<2024.3
commit 3db25dbc9217e1bbf3f9ecee955d3bd0dd3fe042
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 14:24:07 2024 +0200
update test data
commit 9137beb813587b5e9e3139d9ebcce99f6ee50954
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 13:51:48 2024 +0200
Clear test data
commit 69cefb5cbcdde55432018e7b94bacaa843790e41
Merge: 7d1680be de0d54fd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 13:44:43 2024 +0200
Merge branch 'master' into bgc-2024
commit 8c75ef428715837a453bb9ed230e25346ab2c6cd
Merge: d8a25d34 de0d54fd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 13:41:50 2024 +0200
Merge branch 'master' into releasev0.1.16
commit de0d54fd216e299b2b0438388d5710975cb0d4e2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 13:15:35 2024 +0200
Yet another update to test data 😭
commit f890a83470f2cb0503d3a17bc22aedae74e45c3d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 10:56:44 2024 +0200
Update BGC test data
commit 06eed8c24aea3f6f55d8c77c25b99e9096a19297
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 10:56:18 2024 +0200
Update test_fetchers_data_erddap_bgc.py
- improve debug message to better identify failing test
commit 4ee991335a924d76bcc2af63995a088a788071e8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 10:55:17 2024 +0200
Update erddap_data.py
- fix bug in N_POINTS properties that was not using the real list of fetched URIs
commit 966a3ebb961dcff9283627b4fc3f2a73e71325e5
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 16:12:57 2024 +0200
Restore use of mocked server
commit d8a25d34617560c72ec8bff151d069c1f67b1f05
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 16:12:27 2024 +0200
Restore use of mocked server
commit 94e17e3442e7ac0f3e042a3070fc94e6e8784cfa
Merge: a11d0ca0 59ba8ffb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 16:02:08 2024 +0200
Merge branch 'master' into releasev0.1.16
commit 59ba8ffb8320a108821d15d1184b198bb8b0441c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 15:55:01 2024 +0200
Updtae test data
commit 788fae68a9395642f3de34c4f49594f8cd4c5879
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 15:50:01 2024 +0200
Update citests_httpdata_manager
commit 83840f8d32a5bfeb4ac595cb247bc9452c24d76b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 15:49:55 2024 +0200
Update test data
commit 600b49d5773bd246d7fca0c73b698774687173b3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 15:04:38 2024 +0200
More test data update
commit c1e801d274601040891579ad41c95b511bcc8dfe
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:37:20 2024 +0200
🥶 😱
- implement httpstore urls_registry property: new feature taken from bgc-2024 (not merged yet) but necessary to use the citests_httpdata_manager !
- bad practice ! due to my horrible tendency to put too much in a PR
commit ac694fe336b56ea88fed38f84a2459e2555d661b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:26:31 2024 +0200
Update citests_httpdata_manager
commit cfe06637182eed35396ca886d4c2067fe8d3f545
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:26:20 2024 +0200
Clean up again test data
commit 8348e34ee464cdd06dd91b5c4fc80d4077eacd38
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:23:56 2024 +0200
Update citests_httpdata_manager
commit e1b8af412e4d5105ce859197c3d5ae51b21c1dd4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:23:46 2024 +0200
Update test_xarray_accessor.py
commit 7d1680be5565a9069f840d5184c164d3d6367898
Merge: b6c84863 78ce0f73
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:03:21 2024 +0200
Merge branch 'master' into bgc-2024
commit a11d0ca07ed972b3edcdfed2dcc8b54002510bfe
Merge: 3011406a 78ce0f73
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:02:22 2024 +0200
Merge branch 'master' into releasev0.1.16
commit 78ce0f7303f7f2d5117908b49e116e7b7cd49001
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:02:08 2024 +0200
Add missin altim test data
commit 3011406a1ab7b21533a71e575892703f9dfd2373
Merge: e7b210d6 3810eac3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 11:37:23 2024 +0200
Merge branch 'master' into releasev0.1.16
commit 3810eac33e0e10b3d4a7d89c38e2a5e8e0377c77
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 11:36:44 2024 +0200
Update test data
commit b6c848638b1c0a5771a4ad5e4eb97f923c122d54
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 10:23:54 2024 +0200
Update test_data
commit 27d4f5799fe4b190912d97b2dc95a23a03da26eb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 09:39:00 2024 +0200
Update mocked_http.py
- mv from pikcle to json registry file
commit 8ffddde549525639767c7e8eaff40845b76a3dd9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 09:35:20 2024 +0200
Update test data
commit 058ba9b6b692afb968556ec2f8213cbf59820578
Merge: 284a5d21 1ab75e7b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 15:45:21 2024 +0200
Merge branch 'master' into bgc-2024
commit 284a5d2189d80cd1b7c7c3e00e94ca1e0715c549
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 15:41:01 2024 +0200
Clear test data
commit 1ab75e7b3acd6fc7541bdab63d42d0d07ef3dbc0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 15:39:59 2024 +0200
fix for test data with new erddap
commit 0578b05d9e3a72f4b1b6ce1bd20a1c2799df0fa6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 15:39:22 2024 +0200
clear test data
commit 1516689f9f1483b83e61e628c53beff7ab55c65a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 10:57:33 2024 +0200
citests data manager
commit e3c3ee24dac11be0c2821b7e4805b9ef9ffdb274
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 10:51:00 2024 +0200
Update test data
commit cf1722f3f6721089583267eba85573de59c8261b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 10:23:54 2024 +0200
Create citests_httpdata_manager_altim.json
commit e7b210d614d3ad45566f2b96cc68a8ffb2566ce8
Merge: 74b54a5e 70c37bf2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 10:13:29 2024 +0200
Merge branch 'master' into releasev0.1.16
commit 70c37bf27ac73e08236aa2f4ff346ea4a46268b3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 10:10:34 2024 +0200
Update test data
commit f7ac81ad522c9d1a7974854ed10e5185134c3487
Merge: 289a4aa8 76cb3261
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 09:27:44 2024 +0200
Merge pull request #344 from euroargodev/erddap-update
Erddap update
Merging anyway because fails tests are due to mocked server data to be solved and ok on master
commit 76cb326175a43fb65012d338d9bcd783f2a34db0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 08:19:04 2024 +0200
Update whats-new.rst
commit 9bb5ac0ae160c3670cfd12e5d5ff3b8b97d2e954
Merge: 765cd5dc 289a4aa8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 08:17:57 2024 +0200
Merge branch 'master' into erddap-update
commit 74b54a5e7ff7738a1668cad02951f6e196be8370
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 08:15:56 2024 +0200
Update install.rst
commit 98cd7b618b43df94de8fe83888e870f6cd85c13a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 08:00:11 2024 +0200
Misc
commit 2554876505c69534e3e82bd1a42fd8532f9bd3f4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 07:59:26 2024 +0200
Upgrade py3.9 pinned versions
commit c8593357c40e7abd9ec19247d0ca9d92db30cf74
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 07:33:14 2024 +0200
Update requirements.txt
commit 808e3fee62dd1e5719f509e97c076af6974e64f9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 15:49:02 2024 +0200
Update requirements.txt
commit cfe17db9328ee72f3f218ca06adbb7b6b0014425
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 15:48:57 2024 +0200
Remove py 3.8 env files
commit 3c25411bd2e236f2335c8a5f14633689ef2b0e10
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 15:26:47 2024 +0200
Update readthedocs.yml
commit b937fbd6c72874671baeb49e00ee99d1a35159f7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 14:16:27 2024 +0200
Update impact.rst
commit c062ee06453e96b51335c6408093bda178ee4b32
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 14:16:24 2024 +0200
Update rtd env
commit 90e66251c6b43963140dca790e5b671e868df52b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 11:00:11 2024 +0200
xarray < 2024.3 in pinned env
commit 36708d5c47fc5743d8eccaa5612f65e00d7347c9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 10:56:51 2024 +0200
xarray < 2024.3
while https://github.com/pydata/xarray/issues/8909 is not solved
commit 860f3ec0345c8dca4b4e63d2679924c50bc072f7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 10:41:34 2024 +0200
Update casting.py
- delete deprecated `cast_types`
commit 844b4150b9e2b6b212b3afda1b62dd47a9c79ce0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 10:41:10 2024 +0200
fix 3.10 env
commit f4fb3833c61f3e61260d5c16545471be6981f2bb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 10:28:34 2024 +0200
More 3.10 CI tests support
commit a3df8851374e686718af58f1fbfca1f367bc98d3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 10:27:18 2024 +0200
Improve show_versions following support for py 3.10
commit 7a98bc132e5015230e39303adef54e54b5aa9ae9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 16:48:35 2024 +0200
Add support for python 3.10, drop 3.8
commit c1fc7c01058457e9050e40ec360024036ed040d5
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:51:12 2024 +0200
Delete utilities.py
commit 755de3c908a56a7c8dc1ea8407b3e733859d566c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:50:59 2024 +0200
black + flake8
commit e52a9ea47d0c7442df03c7ab0a5c575e8f4f3f49
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:24:48 2024 +0200
Codespell
commit 0c227bf22754fb480b23765273658df091a8efb0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:24:41 2024 +0200
Update setup.py
commit baa3033e5997582bd84bace65b02bbae2757cfbd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:17:19 2024 +0200
Update whats-new.rst
commit 765cd5dc1e9504d21827169ada293748b91e8eec
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:03:33 2024 +0200
Update test data for erddap
commit 64c3582a54c48a62d066c81e61abeed2af66cff3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:03:09 2024 +0200
Update test_fetchers_data_erddap_bgc.py
- removed unneeded test
commit 289a4aa8391cb4cf08a605bbe4dc23a945e9081b
Merge: 8102bfef 39daa57b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 14:59:43 2024 +0200
Merge pull request #378 from euroargodev/377-content-response-from-nerc-vocabulary-server-seems-change-that-makes-argonvsreferencetables-fail
Update ArgoNVSReferenceTables to handle new NVS server output format
commit b461ed202a9013696be1b0b0d2e564bc4641d696
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 14:25:32 2024 +0200
Update test_fetchers_data_erddap.py
commit 39daa57beb81ad3867063ec22d3c324dc47cf89c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 14:06:14 2024 +0200
Update test data for new NVS server responses
commit e49498ef90156ab0a1f3dcfb7ec96d26fc4827df
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 14:05:36 2024 +0200
Update test_related.py
- fix for new server keys
commit 6996dc3d646b510c067118dc999b8c0ddd369ea1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 14:05:13 2024 +0200
Update reference_tables.py
- fix to use new keys
commit 3cb02e02de370b7df43f6e533d6ae6ed30c0f743
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 11:29:16 2024 +0200
Update whats-new.rst
commit de218b10477ae0d9d3569184610e2c155d8edffe
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 15:33:07 2024 +0200
Update test data
commit 20ea26b4ef20796d8c5f30f357a15210c036d75e
Merge: 6853f05f 8102bfef
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 15:27:06 2024 +0200
Merge branch 'master' into bgc-2024
commit 6853f05f273b613763ab4016acb34cf477cd6146
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 15:20:21 2024 +0200
Add CLI folder to git
commit 17c8fb7ed9e7543338d5553eddc33c7c9ac9de7e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 15:15:54 2024 +0200
Update erddap_data.py
- fix bug mal-formatting url for ref dataset
commit c9eb9a34d1ab546a151f1ef9c7719af1db1a464d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 14:19:18 2024 +0200
Update xarray.py
- fix bug in filter_researchmode
commit b6af5f61704a7a5cc34a5dc171c6beb152fa69c0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 13:50:49 2024 +0200
Update mocked_http.py
move from pickle to json db file in tests data
commit d9746e5de6286cf39b484828d1ca366e17fd3553
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 13:50:15 2024 +0200
Update erddap_data.py
- removed BGC measurements constraints on the erddap request because it is too unstable
- latitude and longitude must not be NaN
- pres/temp/psal adjusted not nan in research mode in the erddap request
- fix bug in N_POINTS properties that was not using the effective URI to be fetched
commit 4ad0e784910c08eb14b6760789dbca805aaade85
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 10:40:13 2024 +0200
Update erddap_data.py
- fix bug where by in research mode URL was still using pres instead of pres_adjusted
commit ca18b0d0d6940addfe3e679148ec7e58857a218b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 10:39:25 2024 +0200
Re-activate mock server with erddap tests
commit dc3ab40d408d00105b0c6ef0a3006f015a46d564
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 10:38:47 2024 +0200
Improve coverage
commit 044602adb32357ef47e101a8b9526eb0bbc6a8b3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 10:38:32 2024 +0200
Update tutorial.py
commit 1aa3ed452d646025c56ef9e1fc3927c03bdf459b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 18 14:13:49 2024 +0200
Update proto.py
fix bug in data fetcher proto sha not unique for different user modes
commit 02264fdc24c9b650edce3bf3c6db9619370d14b1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 18 14:13:12 2024 +0200
Update xarray.py
commit 654b53a1f7241cfada94f1640f8578364c0466a8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 17 09:33:08 2024 +0200
Use real erddap server in CI tests
commit 8102bfef6268ddfe6bec72296deae33d7bd21234
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 16 11:46:17 2024 +0200
Remove US GODAE ftp references
Closes #320
commit 6f761426aa3d874dcf28c4cfb70f09fdf69ea480
Merge: d2bb38ba feecd02b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 16 11:29:34 2024 +0200
Merge branch 'master' into erddap-update
commit feecd02be81ee39e55f5aa32cfaf9db5e481d1cd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 17:22:01 2024 +0200
Update whats-new.rst
commit 814ae7fa7fa6a739189970459af307b3bbc0997f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 16:17:12 2024 +0200
Update filesystems.py
commit 3655bc80064ec8e0dc4fecd8f9b5a951158c8654
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 16:17:09 2024 +0200
update test data
commit 8c38f1357d792ab9df2ebe878fd4e5e421603d5c
Merge: 16762975 470a3d9f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 15:15:05 2024 +0200
Merge branch 'master' into bgc-2024
commit d2bb38ba128f05841b4f333ec3db92c4384805af
Merge: e76d2e58 470a3d9f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 14:24:30 2024 +0200
Merge branch 'master' into erddap-update
commit 470a3d9f9cfa297d249364929499ca0ff8d86618
Merge: 542fd241 70c01269
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 14:21:28 2024 +0200
Merge pull request #326 from euroargodev/gdac-amazons3
S3 support
commit 70c0126990972afb864342e42ad7e390f39fe4ae
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 12:58:20 2024 +0200
Upper bound on xarray < 2024.3
Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex'
commit ed29bd0e9d20e6cebdd1e524a4ba0b48ff609789
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 11:25:44 2024 +0200
Upper bound on xarray < 2024.4
Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex'
commit a89b8c90e5ca28a74390381d746e43b661a27ccb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 10:34:12 2024 +0200
upper bound on xarray < 2024.5
Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex'
commit e76d2e5819f239eeb30a2249a84e72b15c2d0286
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 10:32:22 2024 +0200
Update erddap_refdata.py
commit 8ca8cd160016b503901e329464534241e768837a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 10:00:53 2024 +0200
Upper bound on xarray
AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex'
https://github.com/pydata/xarray/issues/8909
commit 6b8b3a816554d2bca7ffe33040caff12e2502ca4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 15:56:52 2024 +0200
Update xarray.py
fix upstream numpy.exceptions.DTypePromotionError
commit 4f27289f89d609e287affb7aa08c5df0fb5f20da
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 15:56:41 2024 +0200
Update gdacftp_data.py
commit ef055ee76be77180b6f6a6c0b110d627d29e8f65
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 15:56:39 2024 +0200
Update __init__.py
commit 8af82c7ed47b67f744b36fef2adb17f3fe0fd97e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 15:10:40 2024 +0200
Update gdacftp_data.py
commit 8c0b32d04d40a95be90a6f985bfc10d1d6496e67
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 14:27:13 2024 +0200
Update test_stores_index.py
commit c18b2ad0140b238162df637102b5dc071f43e04e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 14:26:57 2024 +0200
Update test_stores_index.py
commit 6901a9c64351ff6dde76cbe396ded7427661e9bb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 14:26:29 2024 +0200
Update test_stores_index.py
commit d49a3291e14d82090a33a48839ece9dc26d65070
Merge: 50760d16 d702ada5
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 14:24:51 2024 +0200
Merge branch 'erddap-update' of https://github.com/euroargodev/argopy into erddap-update
commit 50760d16a4c88dce3b2f0f446316dec0e9c510cd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 14:24:48 2024 +0200
Update erddap_data.py
commit d702ada5488b86a8b9a06fcac5a7163ba012582e
Merge: 98429124 542fd241
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 16:55:26 2024 +0200
Merge branch 'master' into erddap-update
commit 9842912453062284242aebf3d86a08371d050e64
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 16:52:11 2024 +0200
drop support for erddapy < 0.8
commit e677992b602f3db3500929f6dd9cf5a75de90425
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 16:43:48 2024 +0200
Update filesystems.py
commit 59912390357de72decc54f100c3298403735530a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 16:38:17 2024 +0200
Update argo_index_proto_s3.py
commit fbdbb1f1073f1dcd2e5bbd13bdf04169f9ebfbfa
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 16:35:58 2024 +0200
misc [skip-ci]
commit 50560f7da051182b814cd68cc204aba18c5899c5
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 15:53:14 2024 +0200
[skip-ci]
commit 0443ae441605609a595318e6f98d242ebb0a5869
Merge: 77260939 542fd241
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 14:54:03 2024 +0200
Merge branch 'master' into gdac-amazons3
commit 542fd241c99b3a11e2448c7bf5b4da99c11f7edd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 14:49:07 2024 +0200
Update workflows to access s3 creds
commit 77260939b34efcba1c391994e86207c8897b3493
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 14:46:24 2024 +0200
update workflow to access s3
commit 26e06e99a9bf160588a16e9fbe925e72f31081e7
Merge: a357439e 0c8d7e42
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 11:20:57 2024 +0200
Merge pull request #371 from bkatiemills/argovisV2
basic integration of argovis API 2.x
commit 0c8d7e42f7f54f2a975c56a4ae88ff428ce6fb55
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:50:01 2024 +0200
Update whats-new.rst
commit 604af4e3eefa53a38e75eb8cf4d1cf1a4c8dc582
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:47:15 2024 +0200
Update argovis_data.py
commit a2e47a2370e7333cf9afdd2d880e6b513411a24c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:37:31 2024 +0200
Update argovis_data.py
commit 86c042e95fea5f504c4d64fd2ee8340df0d83963
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:37:22 2024 +0200
Update options.py
points to argovis key generator
commit f51d4485a5541c42362ac78b057d6e2494d8dbfd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:28:53 2024 +0200
Update filesystems.py
- fix bug in merging user arguments for the http file store instance
commit f49aaed3a764216ac09886832776a1854d8890cb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:07:06 2024 +0200
Update options.py
Add missing checker for new `argovis_api_key` option
commit 3747d251ee1054fea217f5cac11fe2ceb307fa5b
Merge: 9b053b67 6037f6ad
Author: bkatiemills <you@example.com>
Date: Tue Jul 9 14:42:44 2024 -0400
Merge branch 'argovisV2' of https://github.com/bkatiemills/argopy into argovisV2
commit 9b053b67033578fe16e3a394b595b922ad79f31a
Author: bkatiemills <you@example.com>
Date: Tue Jul 9 14:38:46 2024 -0400
argovis API key injection
commit b88de82a631b17a501b4919c674c3042aeb50f4a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 18:26:59 2024 +0200
misc
- local tests ok
commit 6037f6ad8c3bc759bcd8eb8957bd148051a7f882
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 16:41:31 2024 +0200
Update whats-new.rst
commit 3d2aecfe4d285d1a9a8386505cc13fcfea7e65d3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 16:33:34 2024 +0200
Removed obsolete filter_domain
because https://github.com/euroargodev/argopy/issues/48 is closed
commit 16762975b657b56f1c5c650e5e8bd6941cda4ec3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 12:06:06 2024 +0200
Add URL registry for erddap fetcher
- force the indexfs to use the httpstore from the fetcher
- add a registry in the httpstore
commit c79cb360d7d87b2719a326e7f6517aed1d0dff7a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 11:27:49 2024 +0200
Update erddap_data.py
- add checker on BGC parameters provided in params and measured, raises a ValueError if parameters is not found
commit 29ddf8723021bba621c809aa117f264842a08698
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 11:01:07 2024 +0200
misc
- refactor _bgc_vlist_requested to _bgc_vlist_params for consistancy
- improve docstrings
- turn off mocked server for erddap tests
commit c4e8c9c36406e4d9d145e39a1be5e50a295213bc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 17:48:03 2024 +0200
fix CI tests
commit 84aeef29a4b4d4491309405bd3bb022c59aacabe
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 17:30:25 2024 +0200
removed unused raiseNoDataLeft
commit f5df4e7bd1abceaabe669af54fdec5feeab55067
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 17:21:35 2024 +0200
Apply Black on xarray
commit e959d7fd7bdc9f6f7b07c122dfbb8c8e8c8da662
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 17:12:35 2024 +0200
Better docstrings
commit 3c4b355a2e6d0ce31f1379cb43ffbb14dcf8efac
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 17:12:10 2024 +0200
Update fetchers to use correct filter_data_mode
commit 361f12cb1abd5b8c076e445ace275e77f761ea2d
Merge: 83b95018 a357439e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 16:42:42 2024 +0200
Merge branch 'master' into bgc-2024
commit 83b9501849254f826830fcb760ae5170185b2689
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 16:41:35 2024 +0200
Add deprecation policy for filter_data_mode
- mark 'filter_data_mode' as deprecated while preserving legacy behavior
- new, correct 'filter_data_mode' is temporarily at 'filter_data_mode'
commit a357439e44f411bd04303ab810a9ad246fd51f60
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 16:31:05 2024 +0200
Upgrade deprecated decorator
- allows to be ignored from some caller
- introduce version argument
commit ffa3ff243354a0fad98cba9c830d8b1f2046b6e5
Author: bkatiemills <you@example.com>
Date: Fri Jul 5 14:11:37 2024 -0400
box region queries
commit 9aa1ba36e2278cdb001c316c227328daf7389c0a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 5 15:26:57 2024 +0200
Fix missing lists from utils
commit 9a7c4188cffaedc2601018f84e21bb4a40a9a232
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 5 15:11:37 2024 +0200
catching up
- allow for ds='bgc-s' in place of ds='bgc'
- new decorator raiseNoDataLeft
- better docstrings
- fix llcache/lscache cli
- DataNotFound and NoDataLeft inherits from NoData
- some internal refactoring in facade
commit 41174a7db49dc48c3207dbf84c1aa08decb9eaef
Author: bkatiemills <you@example.com>
Date: Thu Jul 4 15:56:42 2024 -0400
provide correct liveness probe endpoint to api_server_check
commit f476f3ebe608dde67a3b88d4c285c378f0f73856
Author: bkatiemills <you@example.com>
Date: Tue Jul 2 12:40:38 2024 -0400
basic integration of argovis API 2.x
commit 0372f38fa8285b98dd4a7bfd908ce88d9e6fa7f4
Merge: d370d33c d5148290
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 2 10:10:11 2024 +0200
Merge pull request #370 from euroargodev/dependabot/pip/ipython-lte-8.26.0
pip prod(deps): update ipython requirement from <=8.25.0 to <=8.26.0
commit d370d33c2a1ca5a86992e214e642af1c4f0e46ac
Merge: fb3f9117 8978d83d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 1 09:31:24 2024 +0200
Merge pull request #367 from green-coding-solutions/eco-ci-v4
Eco-CI v4.0-rc3
commit d51482906f073deb9412f4a2d03440cdaa8dc74f
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jul 1 04:28:30 2024 +0000
pip prod(deps): update ipython requirement from <=8.25.0 to <=8.26.0
Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](https://github.com/ipython/ipython/compare/5.0.0...8.26.0)
---
updated-dependencies:
- dependency-name: ipython
dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
commit 8978d83d18e073c6fced620f4beb7205a4d742c0
Author: Arne Tarara <arne@datafuse.de>
Date: Sat Jun 29 21:53:30 2024 +0200
Removed pr-comment and PR write permissions
commit fb3f9117545c27b30702444806a93e3bfaff454c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 21 14:39:48 2024 +0200
New impact section in the doc
commit bfe9e91ecae3846736c8b0b8e7ae335110c6aa70
Author: Arne Tarara <arne@datafuse.de>
Date: Tue Jun 18 15:14:21 2024 +0200
UPSTREAM added in other workflow
commit 9df2cb0f64816b7a11911b0e71009966dc22000d
Author: Arne Tarara <arne@datafuse.de>
Date: Tue Jun 18 15:12:18 2024 +0200
Moved to v4.0-rc3; Adding PR-Comments; removed supeflous UUID mentions; Added machine-uuid
commit 49f5ea2f01fd7d1c2b94d773b6df611cb712ad8b
Merge: 233ed147 b3daa650
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 18 10:44:18 2024 +0200
Merge pull request #366 from euroargodev/dependabot/github_actions/codecov/codecov-action-4.5.0
Bump codecov/codecov-action from 4.4.1 to 4.5.0
commit b3daa6506fed9829293baa8de5fda02e31b51c8a
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jun 17 04:34:22 2024 +0000
Bump codecov/codecov-action from 4.4.1 to 4.5.0
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.4.1 to 4.5.0.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/codecov/codecov-action/compare/v4.4.1...v4.5.0)
---
updated-dependencies:
- dependency-name: codecov/codecov-action
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
commit a23e93f71d176f50308a50feb9875bde86b98785
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 18:48:13 2024 +0200
Update argo_index_proto_s3.py
commit 38d4a785244d75a681a3aba318ed4a4e679f31ab
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 18:05:18 2024 +0200
Update argo_index_proto_s3.py
commit b43fbebbb79cf3ca961c09ec2abc7496e9209d70
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 15:32:48 2024 +0200
Update argo_index_proto_s3.py
commit 68e362b06081e00d92e71eb68d4cd85a1f0e16e4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 15:30:07 2024 +0200
Update argo_index_proto_s3.py
more log info for CI tests debug
commit 233ed147e39cbb5805e7fc73108f90c09abf962b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 10:58:03 2024 +0200
Fix bug in the facade
commit 9055e71e89758c770a3aeed641102b4121e8dcb7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 10:55:50 2024 +0200
Fix bug in the facade
commit a7cff79f0671b636cb220dbbaba519ec0bd7386a
Merge: f6269e9f 9de84079
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 09:58:38 2024 +0200
Merge branch 'master' into gdac-amazons3
commit f6269e9fd361406177d26dbf73518cd97b76201a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 09:41:27 2024 +0200
Update argo_index_proto_s3.py
commit c8d546d97d4b444e2547680264baa759d923157c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 13 17:45:14 2024 +0200
Add new bgc-s and ngc-b dataset
This shall allows to make the difference between the synthetic and the other BGC files
commit 148beb06e1308d7b7d111abd90e15e78f83a2795
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 13 16:22:29 2024 +0200
New split_data_mode transform
so that we can handle PARAMETER_DATA_MODE
commit 1ea391e617d9db38276d529c786985b27b02a196
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 13 16:21:52 2024 +0200
Update canyon_med.py
commit 2dde63be5cee80a5f66b70a7e40345ec51344193
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 13 16:21:36 2024 +0200
Update gdacftp_data.py
Preserve original netcdf file attrs
commit a7231f36588ad5b0cf18d36adde2c808368e76d7
Merge: 9bc14033 8d59c03e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 13 09:39:15 2024 +0200
Merge branch 'bgc-2024-canyon' into bgc-2024
commit 9bc14033e504181f779cdc00fb5aa77d3c6974ae
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 17:08:21 2024 +0200
Fix docstrings
commit 8d59c03ea211dbe2d0a1e921ecec3c8e6460f3f1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 16:55:33 2024 +0200
Update canyon_med.py
commit d5bc78c6f0c30cc2f36a8dc539c90cc433706463
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 16:45:24 2024 +0200
Add mask to ensure that input measurements are in the Mediterranean Sea
commit 2fa392e645143d3e679b37f6a5049b85475a9ab7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 16:18:49 2024 +0200
Update extensions sub-module
- Create proto class for inheritance
commit 79b98a7a7008af59a8a5ba62eb1ae1fa1bc49120
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 16:00:24 2024 +0200
Update documentation
commit 6a4633d55670ab1f114147622574c5710f95a527
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 16:00:01 2024 +0200
New 'extensions' submodule
- In this sub-module, we shall find all methods/classes that will be used an "extension" to the xarray Argo accessor
- The goal is to facilitate the dev of more extensions for new comers
- Refactor Canyon-MED in the new 'extensions' submodule
commit cc7a86994855924d7c0d430e42b5cec26382d705
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 10:17:24 2024 +0200
Bring CanyonMED to argopy !
commit d3a90602d1fc4d5f135c18a7e2ac2779fa9d0652
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 10:17:10 2024 +0200
misc
commit ce11e5008fb31cde981f5e3052ab2035f588b1ab
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 10:16:41 2024 +0200
New register_argodataset_accessor
This would be a simple mechanism to provide extensions to the argo xarray accessor
commit e6ade192f48095788c1e46b91e55e119a5d8ff07
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 19:46:38 2024 +0200
CANYON-MED NN weights
commit afbe4d9cc615cb9284bdddeadffd181fb1f8f4ab
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 19:45:03 2024 +0200
kick start
commit f552cb98ac77a0989db2983396580fbe5aa538a7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 19:38:52 2024 +0200
Add support BGC HDF5 netcdf file
commit bac1387b226de5ee7c9b36ee72e3b4a8c87bcd27
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 17:47:58 2024 +0200
fix bugs here and there
commit 1657ed02d4acc7fb9d2a21db4e8e41d7fed73095
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 13:29:19 2024 +0200
Improve filters
commit a569adc58f1f492039459f10d656909507045180
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 13:29:06 2024 +0200
more BGC var/param listing
- list_bgc_s_variables, list_bgc_s_parameters
- list_radiometry_variables, list_radiometry_parameters
- list_core_parameters
commit f047945e19c3617e9f603b025dc7dabb519d5e8e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 13:27:01 2024 +0200
Update fetchers.py
- add postprocessors for BGC
commit cf38c5b6a11deaf80f05cd3fd716fcb93dd6d7b0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 13:26:30 2024 +0200
Update proto.py
Update filter_variables to support BGC
commit 63d12722569b99b933bd367c8e75b86bfd9c272b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 13:26:00 2024 +0200
Add user_mode properties to low-level fetchers
commit 7e0bb4d3dfe0ee3f9e0f0bf8f53728151ded343f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jun 10 18:58:46 2024 +0200
New filter_data_mode, not backward compatible
- Add filter_data_mode that really filter the data according to their DATA MODE (previous version was actually merging PARAM and PARAM_ADJUSTED, this is now done by transform_data_mode
commit 5a96ff6e8470710512b6ff720a74bd05480b309c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jun 10 18:53:32 2024 +0200
Cleaner postprocessor definition in the facade
commit da89110c7c90fba5516f03952d2ea83194e5eff2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jun 10 09:26:19 2024 +0200
Update erddap_data.py
- fix list of bgc variables to request and their constraints
- reduced final checks in to_xarray for bgc to filter_measured
- delete filter_points, new filter_measured
- filter_measured applies to <PARAM> OR <PARAM>_ADJUSTED
commit 930fc6413ae95f0dfd6b6411e1d4e89b90aaa63f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jun 10 09:06:44 2024 +0200
docstring
commit fe59468fce557f1c70c919d661bb2289b5082e35
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jun 10 09:06:31 2024 +0200
Update fetchers.py
- fix bug in to_index data fetcher method whereby the index could differ from the dataset
commit e22be870214102684494230aa9335e66c201c76b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 16:05:15 2024 +0200
Update test data
commit 2265e6205c238e4cfa067367068a36fc61369f89
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 15:26:05 2024 +0200
breaking change: renamed argo.filter_data_mode into argo.transform_data_mode
commit 5592efcb59a41cb5ef68de382f6689df49e1bad1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 14:51:43 2024 +0200
New xarray.argo.transform_data_mode
- based on new utility merge_param_with_param_adjusted
commit 861ff3148cdedf894c2270059f8a2471a982668e
Merge: 6696a73d 9de84079
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 10:34:34 2024 +0200
Merge branch 'master' into bgc-2024
commit 9de84079c2a7aa99f7883690519b3cd3d53461a2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 10:34:20 2024 +0200
[skip-ci]
commit be454e15ea08cd9deacb248391040a08b8db2301
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 10:29:42 2024 +0200
Update doi_snapshot.py
commit 4bc51bdc61bf1f3a031df9d26fd7f3ce0293b96f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 10:16:29 2024 +0200
Add ArgoDOI to argopy API documentation
commit 6696a73dc3623e15435e4168b87695184297adb2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 6 16:33:27 2024 +0200
Update xarray.py
- don't remember why these variables were included, not consistant ...
commit a9561e4f158dc18c967e20f04756d1874768ac64
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 6 16:33:04 2024 +0200
Update erddap_data.py
- start support for more user mode in BGC
commit b378da1d05e660e6ef618316352868007b59bc26
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 6 16:31:31 2024 +0200
Add support for the "aux" index file + bug fix
- fix bug with shortcuts in ArgoIndex file and convention
- the ArgoIndex now support the "etc/argo-index/argo_aux-profile_index.txt" index file
commit b9800a69087b223e8d3f9df92b113a1b30d87091
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 5 09:47:16 2024 +0200
Update erddap_data.py
commit 229de718d415a7c4f378c395bc179461ed6798e1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date:…
gmaze
added a commit
that referenced
this pull request
Sep 25, 2024
commit 62ba4cb9aae0cd2ef71b13e4b585a9d0d19da53c
Merge: 919484e8 ce6fed99
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 13:50:16 2024 +0200
Merge pull request #389 from euroargodev/other-major-breaking-refactoring
Implement other than bgc-2024 branch major breaking refactoring for major release v1.0.0
commit ce6fed9992d1692b0a4e698623a1ee469b75f386
Merge: fa05fa78 919484e8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 12:08:02 2024 +0200
Merge branch 'master' into other-major-breaking-refactoring
commit fa05fa78446069cf2c483f036cafc5eecf4f9066
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 12:07:02 2024 +0200
Delete test_deprecated.py
commit 919484e86ef57c8ed3a8009a1b9d6ed8e1104684
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 11:37:21 2024 +0200
Fix ci tests env
fix error libmamba Could not solve for environment specs
The following packages are incompatible
├─ fsspec 2024.9.0* is requested and can be installed;
└─ s3fs 2024.6.1* is not installable because it requires
└─ fsspec 2024.6.1 , which conflicts with any installable versions previously reported.
critical libmamba Could not solve for environment specs
commit 0dc9834dbfe770eed7467908fa9bad18d0559ab6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 11:31:21 2024 +0200
Add upstream tests with python 3.11 and 3.12
commit a1aedc5be403a91374a5bc724419ed744de77728
Merge: 747ba134 549d8c31
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 11:25:09 2024 +0200
Merge branch 'master' into other-major-breaking-refactoring
commit 549d8c3167b69259819e0bcc2cee92afe133f236
Merge: 1e79ec08 2d4785d7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 11:20:42 2024 +0200
Merge pull request #356 from euroargodev/bgc-2024
Work on BGC from 2024 LOV visit
commit 2d4785d79cc5feead2d75271953e501cb79eb43e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 10:30:17 2024 +0200
Remove 45mins timeout for CI tests
commit 17970376b346a1ab2ce0144a5cdd1193079d96a9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 08:03:22 2024 +0200
Update CI tests data
include standard and research mode for erddap BGC
commit 82c20c879868efebb60e2239347ac4a40f877fdb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 07:44:50 2024 +0200
Update CI tests data
commit f7ebc219517e1dba28df6ecb1ba3ddfbdaa6616a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 25 07:39:34 2024 +0200
Update test_deprecated.py
commit 51355c3bdf4d946618c437fa8446898241bbf137
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 24 12:08:05 2024 +0200
update CI tests data
commit 809adc988bbb219000d0353103a1e6fd9703e4f0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 24 10:37:20 2024 +0200
Update create_json_assets
commit 2ff193f1e8ef464027482ea8b7ca83666897be39
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 24 10:37:15 2024 +0200
Update argovis_data.py
make sure argovis is only using a single filestore
commit a73f72725fa2709691f669790dc092c3434f227e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 24 10:36:53 2024 +0200
Update CI tests data
commit cf41ba4146eeb34b778f6f66cb59a7d890e65f00
Merge: 4681d558 1e79ec08
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 23 14:59:03 2024 +0200
Merge branch 'master' into bgc-2024
commit 4681d5587d7a2d697ae1c0bbf21d991c85938418
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 23 14:57:32 2024 +0200
Clear CI tests for easier merge with master [skip-ci]
commit 1e79ec087d5e836e3d25eec644ba75665c6bd0f1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 23 14:56:59 2024 +0200
Clear CI tests data for easier merge [skip-ci]
commit c9de8b949482e82d6753f3eb70554b95d15dbc4b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 23 14:54:43 2024 +0200
Clear CI tests data before merge
commit a21a644eb449bb8a400751927603034a58d35972
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 23 09:56:26 2024 +0200
Update whats-new.rst
commit fe8b91cd12992743a6765ea57f373398d72f3efd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 15:38:26 2024 +0200
Update requirements.txt
commit 4ae5aab1f2e29403f59ab944ee3270f0dabf1086
Merge: 0f5a7542 b135bfaa
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 15:36:58 2024 +0200
Merge pull request #394 from euroargodev/releasev0.1.17
Prepare for v0.1.17 Bat Release 🦇
commit b135bfaae15fb97ce9eaa9204f57e187a0cd0a6f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 14:16:32 2024 +0200
Update dev env definitions
commit 0f5a7542d72fd8af815403630f5d7ef57c6f73dd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:54:21 2024 +0200
Update HOW_TO_RELEASE.md [skip-ci]
commit 4bc625ef49b781874328dd40d75e897f31215160
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:49:08 2024 +0200
Flake8
commit 34d1a46d2bac79d52678450709d077bfd6733e0d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:45:15 2024 +0200
codespell
commit 62590119e30b4dd477c27865ea437ff5125630aa
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:42:32 2024 +0200
Fix CI tests data update
commit c5ab62276f4859bdb1ad4ad528e0e40ca8b32df4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:36:15 2024 +0200
Update cheatsheet.rst
commit cb66217945ba3d698e4db600eefe6d3f1a712b71
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 13:28:25 2024 +0200
Update cheatsheet PDF
commit 10ff2cfece19fe156a87f12bf01a62177b796780
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:50:15 2024 +0200
Update CI tests data
commit ec0b14cca73cd53ce7761411b0d8a32c889af3ce
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:48:41 2024 +0200
Update HOW_TO_RELEASE.md [skip-ci]
commit e2df7895b90f39b7202ab544f4f87911fed46b8a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:28:55 2024 +0200
Update static assets
commit cffefc01ab57a8f94ba3c7e6482b95e7ee008369
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:28:24 2024 +0200
Update reference_tables.py
commit 6cf264492f7c61f43e750e401fd024b695d4d900
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:07:15 2024 +0200
Update whats-new.rst
commit eb7e689fcd6e1fde88ebbe4059f845cfa902ab45
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 11:07:12 2024 +0200
Update fetchers.py
commit d8121d8802d2f58c4397d00a649ff5f5299bcc6e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 10:58:12 2024 +0200
Update HOW_TO_RELEASE.md [skip-ci]
commit 88ff363c91fd5d4e7c3fe5549f9028def1860bf7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 10:34:20 2024 +0200
Move to v0.1.17, to Beta
commit e48ab550d339a48e40858485ef9f876514e7f58a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 09:47:51 2024 +0200
Update xarray.py
don't anticipate too much on the upcoming filter_data_mode replacement
commit 29a5cfcd5be63f230876abd0abb27c8e071c61e2
Merge: 5a310570 f3b0a56c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 09:45:45 2024 +0200
Merge pull request #388 from euroargodev/deprec-before-major
Introduces deprecation warnings before major v1.0.0 release
commit f3b0a56c5099995173cfa605969427c2f5bc0aac
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 20 08:56:53 2024 +0200
Better deprecation introduction
commit 5a3105708f6c1494e3e99ca88651487d7cac3302
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 19 14:15:02 2024 +0200
Pin erddapy for python < 3.10
See https://github.com/ioos/erddapy/issues/359
commit 747ba134d797683bafa275da73c8e97c9fa22707
Merge: 37f24952 0095fe60
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 18 15:33:08 2024 +0200
Merge branch 'master' into other-major-breaking-refactoring
commit 37f24952dec4c23d12ced7b50331b1a9caa28e7b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 18 15:32:46 2024 +0200
Update monitored_threadpool.py
commit 6d9be491158f2da8335031891ebf2e85402f452b
Merge: 62ece427 0095fe60
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 18 15:30:38 2024 +0200
Merge branch 'master' into bgc-2024
commit 0095fe606796185e48479c48d3ea36a94bb0d685
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 17 11:03:34 2024 +0200
Allows for low level http fetching errors to be ignored
- usefull for a Dask client as a parallel option
commit 26693016c881754995f4b848feaae691f1643a4b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:46:38 2024 +0200
[skip-ci]
commit 87a996d351e32a377f28cc4b8cd5b6284fd3fb15
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:34:15 2024 +0200
Update options.py
improve doctrings
commit e87afe1cc0e453a757f920961c26c1572824d466
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:32:06 2024 +0200
Create test_deprecated.py
Ensure we're having warnings for deprecations
commit c319d0ae3af5eb18a9a4fecebe884430ba102036
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:31:32 2024 +0200
Update xarray.py
fix deprecation warning
commit 19daad3bb8554b31554c0824ef93e01810f11f3f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:31:13 2024 +0200
New deprecation for option 'ftp' replaced by 'gdac'
commit c8906029601cbf5ae35da9ec52e50977462fcad2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 13 14:30:32 2024 +0200
introduce new "OptionDeprecatedWarning"
commit c6bb528b1c037cb01f7a2c446e594edfec23d734
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 12 16:15:21 2024 +0200
Update static assets
commit aa61927728d4f2846f9f256bfddb29c262d590c1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 12 10:22:47 2024 +0200
Update argovis_data.py
removing numpy datetime64 utc warning
commit a62dc9d0f8bf1e8a9889ad85b219c64133df9cbc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 12 10:22:32 2024 +0200
Update test_xarray_accessor.py
commit 46a658615931c226af58443fc491b8483fe629cb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 12 10:22:25 2024 +0200
more ftp to gdac fixing
commit a7557049d8428ab32e214bea7ff1f5a96eac6a63
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 11 14:20:02 2024 +0200
Update test_fetchers_facade_data.py
commit 86f2edd18c8a93e0438b3d62ecd75c75bb096ad6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 11 11:20:06 2024 +0200
More 'ftp' to 'gdac' refactoring
commit 91310fcd1a4315621902a483caee494fd2ebff5f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 16:37:48 2024 +0200
Update checkers.py
commit 1b1c35cb9ac39e422810836c6d6e9d49688b06c2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 16:32:20 2024 +0200
Refactor "FtpPathError" into "GdacPathError"
commit 623aec8a7727fe95e2de90f950910230e8abb504
Merge: 691c4876 62ece427
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 13:09:23 2024 +0200
Merge branch 'bgc-2024' into other-major-breaking-refactoring
commit 691c48762533b0bb4dd860c7c255a2510714b0c9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 13:08:01 2024 +0200
More 'ftp' to 'gdac' refactoring in documentation
commit ea0dc614e4f9a8e53040157c4856dac8661490cb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 13:00:54 2024 +0200
More 'ftp' to 'gdac' refactoring
commit 07bc71df654b0b0e3ee6f6c4c1c214ee04a55747
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:48:30 2024 +0200
Refactor "ftp" vocab to "gdac"
- option "ftp" renamed "gdac"
- "FTPArgoDataFetcher" renamed "GDACArgoDataFetcher"
- GDAC fetchers argument "ftp" renamed "gdac"
- "validate_ftp" renamed "validate_gdac" in options.py
commit e2c25fc5449e7bf847272e3b0f2c561fa7e0b101
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:45:17 2024 +0200
upgrade pinned s3fs
commit c379d550646df56c80df092e9c569b6b09f3abf0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:26:35 2024 +0200
Refactor "gdacftp_*" modules into "gdac_*"
commit 62ece427f01a73bb98d0eeb7dd92f71567f33376
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:23:23 2024 +0200
misc
commit 7d103b1c045d08b55257ac79db9f93e7ba74ea6d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:13:48 2024 +0200
Update pytest.ini
commit 3875306c19b64645dae4369131717ce67c600786
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 12:13:18 2024 +0200
s3fs > 2023.12.12
/home/runner/micromamba/envs/argopy-tests/lib/python3.10/site-packages/fsspec/registry.py:279: UserWarning: Your installed version of s3fs is very old and known to cause severe performance issues, see also https://github.com/dask/dask/issues/10276
commit c812f0c4e2767bb5fc4cc8bef73a3f80413589a4
Merge: 942022db 56690321
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:58:30 2024 +0200
Merge branch 'bgc-2024' into other-major-breaking-refactoring
commit 56690321c1037f1e2dbb8bf3051f5c52c2d06f18
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:57:19 2024 +0200
update doc [skip-ci]
commit d40b7690215791c14adce02780975e424d5e40cb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:34:38 2024 +0200
Update test data
commit dc448c8f1874afc99dc2bc63bb1718a63ff4982c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:34:26 2024 +0200
improve logs
commit 245e4b0df08b1ed317058137f09cad82b5dfbdd8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:33:57 2024 +0200
Update xarray.py
- fix bugs whereby list of parameters was not created when the list of params was in the args
commit 4faa1aa72de6e4e7d0a02efc54ace0f1c80d830b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 11:33:23 2024 +0200
Update format.py
- fix bug whereby pressure constraint was on pres_adjusted rather than pres for researcu user mode erddap uri
commit 2eec9a6423ee13daba86766cc12f24cdcf3cbcfc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 10:06:38 2024 +0200
Update User mode documentation page
- describe BGC support for expert and research user modes
commit e72cb63d293d69277e74d8f1899388287fbccfb1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 10:05:05 2024 +0200
fix bugs in variable and parameter lists usage and definition
- list_standard_variables now return list for phy or bgc dataset
- improve consistency of the "variable" vs "parameter" terms usage
- fix bug whereby transforming the dataset according to data mode was not allowing delayed mode only and adjusted only variables in a dataset
- improve docstrings
- limit use of explicit list of parameters, fall back on using the utility list functions
commit 925c1559cbe630d5076cf62d4ac86683420a998d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 10 09:59:00 2024 +0200
Update erddap_data.py
- fix bug whereby user mode was not passed to downstream instances when URI was split
commit 942022db6ae3053630f5dfbb437c99ae2c618cec
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 6 09:44:58 2024 +0200
Update fetchers.py
commit 868188754ca7171b2b2a08cd13f961fe94ec9dd9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 6 09:35:58 2024 +0200
Update utils.py
commit d76a1a52d67a217dec584a3d7375457f45f00c08
Merge: 36fca9e4 09d26995
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Sep 6 09:32:14 2024 +0200
Merge branch 'bgc-2024' into other-major-breaking-refactoring
commit 09d269956f151d020b65e923c2f60854b87c4dd1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 16:40:16 2024 +0200
Update utils.py
commit a484e301bb7e8f7ae18837d66021c1fbe52f0469
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 16:36:16 2024 +0200
Improve docstrings
- and refactored argo_accessor into _argo
commit f81842c751fcd62e88f6d77f73a6d29993963c9d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 16:35:25 2024 +0200
Add missing test data
commit 29052b3b4ad629bb0e88ff11dfb87e407d87fd75
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 15:56:11 2024 +0200
Update xarray.py
- fix bug whereby dataset without PSAL would raise errors with filters assuming all core parameters
commit 9affe784751086cd90dd7410101cf50803454eaf
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 15:55:34 2024 +0200
Refactored register_argodataset_accessor into register_argo_accessor
commit 58a8258a2b4b3116c99a9d8a972ebca0aa610b33
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 14:52:59 2024 +0200
Update test data
commit eac13c5f281a502636f63edea46d67c26dc12e84
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 14:52:45 2024 +0200
improve docstrings
commit a7219991ed267f4fe795517952b7233c85aff093
Merge: 62ecdabc 2f2e2dc8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Sep 5 09:25:09 2024 +0200
Merge branch 'master' into bgc-2024
commit 850adf1cbf13f4df06b74d813ffe5cc2880a4e9d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 11:14:10 2024 +0200
Deprec for 'dataset' option replaced by 'ds'
commit 36fca9e4371f83adad73c0602e7f60a6fb717001
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:47:45 2024 +0200
Refactor option "dataset" into "ds"
commit 4070159236db17030c2e6234226b09cb33bb24fc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:35:38 2024 +0200
Refactor option "dataset" into "ds"
- for consistency with fetcher argument name "ds"
commit 62ecdabceea1a4a710874b0d270ca020fee8a649
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:26:31 2024 +0200
Remove filter_data_mode_new
This assume that this branch will be merged for the v1.0.0
commit 1371625cdba6ad85493353c51c9413b7d02f52b6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:12:43 2024 +0200
Update whats-new.rst
commit a988d797e5c5b0bc979dadeb710fb2dc4eab6f07
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:10:43 2024 +0200
Update xarray.py
commit acc789e025a18f5a1d8b5e03629e18f51edb6117
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 10:08:07 2024 +0200
Update xarray.py
commit 2f2e2dc884cf5d3b39aa38339e1027260fc4c60d
Merge: 7f3bbb42 bb18f4b0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 09:21:03 2024 +0200
Merge pull request #384 from euroargodev/dependabot/pip/ipython-lte-8.27.0
pip prod(deps): update ipython requirement from <=8.26.0 to <=8.27.0
merging because this only affect the documentation that seems to build ok !
commit 7f3bbb42eb5ccf4082104cda6b52f0d6d770dc0c
Merge: f843a75f 47629de3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Sep 4 08:07:20 2024 +0200
Merge pull request #383 from euroargodev/argovis-use-mock
Refactor Argovis CI tests to use mock server
commit 47629de3af533f9f5f34ae86e030818a473a3fb1
Merge: 85b86d7c f843a75f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 14:18:17 2024 +0200
Merge branch 'master' into argovis-use-mock
commit 85b86d7c10c7ba6dd3421d559d9f0acb31ce477e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 14:14:40 2024 +0200
Update whats-new.rst
commit f843a75ff2eb7f7434c31d63c6c131db260edbb0
Merge: 5f46ae5c 2cb95931
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 14:12:26 2024 +0200
Merge pull request #382 from euroargodev/test-data-help
Update mocked_http.py
commit c28aab81ad69af34fc897421bec4fa3aacec8776
Merge: ad756412 5f46ae5c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 14:08:02 2024 +0200
Merge branch 'master' into argovis-use-mock
commit 5f46ae5c1318383e37ef1fbba6d60766e21100ea
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 14:06:25 2024 +0200
[skip-ci]
commit ad756412305252f098b9da0f26035d304be833aa
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 13:29:37 2024 +0200
Update citests_httpdata_manager
- fix codeQL
commit 6e74d497838627d2a7f3aeaefb6774243c53a1d6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 13:24:53 2024 +0200
Update cheat sheet PDF
commit 4c46bc8c2ff815ca31e8bfc4756eddcf4af9cc93
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 13:24:42 2024 +0200
Update xarray.py
- fix deprec warning
commit 2fdc1850940a4bbf04424239357e34f15c5d0c2b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Sep 3 13:24:28 2024 +0200
Update documentation
- Removed "Comparison of performances" (way too slow, not useful)
- New page for cheat sheet
- Add icons below logo tor quick helpers
- fix some errors in the docs
- Update contributing
- Add sections to what's new to improve TOC
commit 6f681c082677549c549483649569f6e3af863edc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 2 08:54:56 2024 +0200
[skip-ci]
commit 5eb412bd758e5ebbe2d4666e23b039c68753b4ee
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Sep 2 08:35:15 2024 +0200
Add missing test data
commit bb18f4b061211ed3f44e955b5994cc7b63661bc2
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Sep 2 04:29:45 2024 +0000
pip prod(deps): update ipython requirement from <=8.26.0 to <=8.27.0
Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](https://github.com/ipython/ipython/compare/5.0.0...8.27.0)
---
updated-dependencies:
- dependency-name: ipython
dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
commit cc6657b4270174dac63d3148380df08c4f5d88cc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 16:23:19 2024 +0200
Fix argovis to use mock server data
commit 564eb8c644c4d110e43aeafa71c91efc84663746
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 16:22:30 2024 +0200
update test data for argovis
commit 628d425e0922ec331b3ebf4b03c61c272027cf21
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 15:26:34 2024 +0200
Update fetchers.py
raises OptionValueError when trying to fetch argovis data in expert or research mode
commit 0264174fe86d852b7b264a6ac3d0a22bda0c19ed
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 15:25:58 2024 +0200
update docstrings
commit 2b0e30826a3559ed59f29b0e603558bcfbe1a1c6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 15:25:36 2024 +0200
Update test_fetchers_data_argovis.py
- update argovis fetcher CI tests design
commit a1f9792acfe2a59bd459e6b0a5217d4c89230f84
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 14:58:58 2024 +0200
Update utils.py
commit 36a32381eed464e670288bbfeaa4ceb3bed22938
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 14:58:51 2024 +0200
Update xarray.py
fix FutureWarning
commit 49b29c1cd8bec78362102f0d957a8e76417ded52
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 12:02:30 2024 +0200
update cheatsheet to v0.1.16 [skip-ci]
commit 2b54749f84162f75a09ca943ca81942c716c79ab
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 09:52:31 2024 +0200
[skip-ci]
commit 8341ecadb313280dfa19925764f2ff43bf7edc4d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 30 09:47:40 2024 +0200
Update cheatsheet PDF [skip-ci]
commit 76da448555457d7ec99fd5fcd5168ca2b601dcbf
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 28 15:56:23 2024 +0200
Update mocked_http.py
commit 2cb95931eb0850362420f2f57e75a872f433faab
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 28 15:40:49 2024 +0200
Update mocked_http.py
- Clean up docstrings
- More verbose error message when test data folder is not found
- Flake8 + Black this file
commit da3beaa342213bb1658a7a63638e7ec9fe094843
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 27 10:04:30 2024 +0200
Misc updates post release [skip-ci]
commit 97c8e46ac0e35540ab3cb17173a4e112630f5844
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 16:23:52 2024 +0200
[skip-ci]
commit 7537d11fa9a7b5d0297ba12f5d5ca66e36152793
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 16:01:59 2024 +0200
[skip-ci]
commit f2d654c1c2f7c67e457f30115bd880eeff49581b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 15:55:53 2024 +0200
Update argo_documentation.py
commit 832dbbad099708699191e702b1253ba30ae28832
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 14:50:31 2024 +0200
Update whats-new.rst
commit 2aed4b43c9ecc26832577d180b588fab7fad9cb4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 14:50:23 2024 +0200
Update fetchers.py
commit f60b28d82afbb39e5e20401e21167caed3cda98c
Merge: b8857dba e09eeb20
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 26 14:49:03 2024 +0200
Merge pull request #379 from euroargodev/releasev0.1.16
Prepare for v0.1.16 Flamingos Release 🦩
commit e09eeb20176703a9393bb811a359204b00182acc
Merge: 17e2b52a b8857dba
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 14:34:41 2024 +0200
Merge branch 'master' into releasev0.1.16
commit 17e2b52a9f642f6bc161bfb7daeed65986133669
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 14:31:29 2024 +0200
Pin xarray < 2024.3
commit b8857dbabfa0b4a96f111f75cb894e8068ed2944
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 14:30:05 2024 +0200
Pin xarray<2024.3
commit 97a20e7d4af1e0c6cacbd8158504c01b186873f6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 14:26:09 2024 +0200
pin xarray<2024.3
commit 3db25dbc9217e1bbf3f9ecee955d3bd0dd3fe042
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 14:24:07 2024 +0200
update test data
commit 9137beb813587b5e9e3139d9ebcce99f6ee50954
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 13:51:48 2024 +0200
Clear test data
commit 69cefb5cbcdde55432018e7b94bacaa843790e41
Merge: 7d1680be de0d54fd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 13:44:43 2024 +0200
Merge branch 'master' into bgc-2024
commit 8c75ef428715837a453bb9ed230e25346ab2c6cd
Merge: d8a25d34 de0d54fd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 13:41:50 2024 +0200
Merge branch 'master' into releasev0.1.16
commit de0d54fd216e299b2b0438388d5710975cb0d4e2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 13:15:35 2024 +0200
Yet another update to test data 😭
commit f890a83470f2cb0503d3a17bc22aedae74e45c3d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 10:56:44 2024 +0200
Update BGC test data
commit 06eed8c24aea3f6f55d8c77c25b99e9096a19297
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 10:56:18 2024 +0200
Update test_fetchers_data_erddap_bgc.py
- improve debug message to better identify failing test
commit 4ee991335a924d76bcc2af63995a088a788071e8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Aug 23 10:55:17 2024 +0200
Update erddap_data.py
- fix bug in N_POINTS properties that was not using the real list of fetched URIs
commit 966a3ebb961dcff9283627b4fc3f2a73e71325e5
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 16:12:57 2024 +0200
Restore use of mocked server
commit d8a25d34617560c72ec8bff151d069c1f67b1f05
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 16:12:27 2024 +0200
Restore use of mocked server
commit 94e17e3442e7ac0f3e042a3070fc94e6e8784cfa
Merge: a11d0ca0 59ba8ffb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 16:02:08 2024 +0200
Merge branch 'master' into releasev0.1.16
commit 59ba8ffb8320a108821d15d1184b198bb8b0441c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 15:55:01 2024 +0200
Updtae test data
commit 788fae68a9395642f3de34c4f49594f8cd4c5879
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 15:50:01 2024 +0200
Update citests_httpdata_manager
commit 83840f8d32a5bfeb4ac595cb247bc9452c24d76b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 15:49:55 2024 +0200
Update test data
commit 600b49d5773bd246d7fca0c73b698774687173b3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 15:04:38 2024 +0200
More test data update
commit c1e801d274601040891579ad41c95b511bcc8dfe
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:37:20 2024 +0200
🥶 😱
- implement httpstore urls_registry property: new feature taken from bgc-2024 (not merged yet) but necessary to use the citests_httpdata_manager !
- bad practice ! due to my horrible tendency to put too much in a PR
commit ac694fe336b56ea88fed38f84a2459e2555d661b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:26:31 2024 +0200
Update citests_httpdata_manager
commit cfe06637182eed35396ca886d4c2067fe8d3f545
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:26:20 2024 +0200
Clean up again test data
commit 8348e34ee464cdd06dd91b5c4fc80d4077eacd38
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:23:56 2024 +0200
Update citests_httpdata_manager
commit e1b8af412e4d5105ce859197c3d5ae51b21c1dd4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:23:46 2024 +0200
Update test_xarray_accessor.py
commit 7d1680be5565a9069f840d5184c164d3d6367898
Merge: b6c84863 78ce0f73
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:03:21 2024 +0200
Merge branch 'master' into bgc-2024
commit a11d0ca07ed972b3edcdfed2dcc8b54002510bfe
Merge: 3011406a 78ce0f73
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:02:22 2024 +0200
Merge branch 'master' into releasev0.1.16
commit 78ce0f7303f7f2d5117908b49e116e7b7cd49001
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 14:02:08 2024 +0200
Add missin altim test data
commit 3011406a1ab7b21533a71e575892703f9dfd2373
Merge: e7b210d6 3810eac3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 11:37:23 2024 +0200
Merge branch 'master' into releasev0.1.16
commit 3810eac33e0e10b3d4a7d89c38e2a5e8e0377c77
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 11:36:44 2024 +0200
Update test data
commit b6c848638b1c0a5771a4ad5e4eb97f923c122d54
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 10:23:54 2024 +0200
Update test_data
commit 27d4f5799fe4b190912d97b2dc95a23a03da26eb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 09:39:00 2024 +0200
Update mocked_http.py
- mv from pikcle to json registry file
commit 8ffddde549525639767c7e8eaff40845b76a3dd9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Aug 22 09:35:20 2024 +0200
Update test data
commit 058ba9b6b692afb968556ec2f8213cbf59820578
Merge: 284a5d21 1ab75e7b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 15:45:21 2024 +0200
Merge branch 'master' into bgc-2024
commit 284a5d2189d80cd1b7c7c3e00e94ca1e0715c549
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 15:41:01 2024 +0200
Clear test data
commit 1ab75e7b3acd6fc7541bdab63d42d0d07ef3dbc0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 15:39:59 2024 +0200
fix for test data with new erddap
commit 0578b05d9e3a72f4b1b6ce1bd20a1c2799df0fa6
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 15:39:22 2024 +0200
clear test data
commit 1516689f9f1483b83e61e628c53beff7ab55c65a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 10:57:33 2024 +0200
citests data manager
commit e3c3ee24dac11be0c2821b7e4805b9ef9ffdb274
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 10:51:00 2024 +0200
Update test data
commit cf1722f3f6721089583267eba85573de59c8261b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 10:23:54 2024 +0200
Create citests_httpdata_manager_altim.json
commit e7b210d614d3ad45566f2b96cc68a8ffb2566ce8
Merge: 74b54a5e 70c37bf2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 10:13:29 2024 +0200
Merge branch 'master' into releasev0.1.16
commit 70c37bf27ac73e08236aa2f4ff346ea4a46268b3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 10:10:34 2024 +0200
Update test data
commit f7ac81ad522c9d1a7974854ed10e5185134c3487
Merge: 289a4aa8 76cb3261
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 09:27:44 2024 +0200
Merge pull request #344 from euroargodev/erddap-update
Erddap update
Merging anyway because fails tests are due to mocked server data to be solved and ok on master
commit 76cb326175a43fb65012d338d9bcd783f2a34db0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 08:19:04 2024 +0200
Update whats-new.rst
commit 9bb5ac0ae160c3670cfd12e5d5ff3b8b97d2e954
Merge: 765cd5dc 289a4aa8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 08:17:57 2024 +0200
Merge branch 'master' into erddap-update
commit 74b54a5e7ff7738a1668cad02951f6e196be8370
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 08:15:56 2024 +0200
Update install.rst
commit 98cd7b618b43df94de8fe83888e870f6cd85c13a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 08:00:11 2024 +0200
Misc
commit 2554876505c69534e3e82bd1a42fd8532f9bd3f4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 07:59:26 2024 +0200
Upgrade py3.9 pinned versions
commit c8593357c40e7abd9ec19247d0ca9d92db30cf74
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Aug 21 07:33:14 2024 +0200
Update requirements.txt
commit 808e3fee62dd1e5719f509e97c076af6974e64f9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 15:49:02 2024 +0200
Update requirements.txt
commit cfe17db9328ee72f3f218ca06adbb7b6b0014425
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 15:48:57 2024 +0200
Remove py 3.8 env files
commit 3c25411bd2e236f2335c8a5f14633689ef2b0e10
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 15:26:47 2024 +0200
Update readthedocs.yml
commit b937fbd6c72874671baeb49e00ee99d1a35159f7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 14:16:27 2024 +0200
Update impact.rst
commit c062ee06453e96b51335c6408093bda178ee4b32
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 14:16:24 2024 +0200
Update rtd env
commit 90e66251c6b43963140dca790e5b671e868df52b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 11:00:11 2024 +0200
xarray < 2024.3 in pinned env
commit 36708d5c47fc5743d8eccaa5612f65e00d7347c9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 10:56:51 2024 +0200
xarray < 2024.3
while https://github.com/pydata/xarray/issues/8909 is not solved
commit 860f3ec0345c8dca4b4e63d2679924c50bc072f7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 10:41:34 2024 +0200
Update casting.py
- delete deprecated `cast_types`
commit 844b4150b9e2b6b212b3afda1b62dd47a9c79ce0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 10:41:10 2024 +0200
fix 3.10 env
commit f4fb3833c61f3e61260d5c16545471be6981f2bb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 10:28:34 2024 +0200
More 3.10 CI tests support
commit a3df8851374e686718af58f1fbfca1f367bc98d3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Aug 20 10:27:18 2024 +0200
Improve show_versions following support for py 3.10
commit 7a98bc132e5015230e39303adef54e54b5aa9ae9
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 16:48:35 2024 +0200
Add support for python 3.10, drop 3.8
commit c1fc7c01058457e9050e40ec360024036ed040d5
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:51:12 2024 +0200
Delete utilities.py
commit 755de3c908a56a7c8dc1ea8407b3e733859d566c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:50:59 2024 +0200
black + flake8
commit e52a9ea47d0c7442df03c7ab0a5c575e8f4f3f49
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:24:48 2024 +0200
Codespell
commit 0c227bf22754fb480b23765273658df091a8efb0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:24:41 2024 +0200
Update setup.py
commit baa3033e5997582bd84bace65b02bbae2757cfbd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:17:19 2024 +0200
Update whats-new.rst
commit 765cd5dc1e9504d21827169ada293748b91e8eec
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:03:33 2024 +0200
Update test data for erddap
commit 64c3582a54c48a62d066c81e61abeed2af66cff3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 15:03:09 2024 +0200
Update test_fetchers_data_erddap_bgc.py
- removed unneeded test
commit 289a4aa8391cb4cf08a605bbe4dc23a945e9081b
Merge: 8102bfef 39daa57b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 14:59:43 2024 +0200
Merge pull request #378 from euroargodev/377-content-response-from-nerc-vocabulary-server-seems-change-that-makes-argonvsreferencetables-fail
Update ArgoNVSReferenceTables to handle new NVS server output format
commit b461ed202a9013696be1b0b0d2e564bc4641d696
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 14:25:32 2024 +0200
Update test_fetchers_data_erddap.py
commit 39daa57beb81ad3867063ec22d3c324dc47cf89c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 14:06:14 2024 +0200
Update test data for new NVS server responses
commit e49498ef90156ab0a1f3dcfb7ec96d26fc4827df
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 14:05:36 2024 +0200
Update test_related.py
- fix for new server keys
commit 6996dc3d646b510c067118dc999b8c0ddd369ea1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 14:05:13 2024 +0200
Update reference_tables.py
- fix to use new keys
commit 3cb02e02de370b7df43f6e533d6ae6ed30c0f743
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Aug 19 11:29:16 2024 +0200
Update whats-new.rst
commit de218b10477ae0d9d3569184610e2c155d8edffe
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 15:33:07 2024 +0200
Update test data
commit 20ea26b4ef20796d8c5f30f357a15210c036d75e
Merge: 6853f05f 8102bfef
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 15:27:06 2024 +0200
Merge branch 'master' into bgc-2024
commit 6853f05f273b613763ab4016acb34cf477cd6146
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 15:20:21 2024 +0200
Add CLI folder to git
commit 17c8fb7ed9e7543338d5553eddc33c7c9ac9de7e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 15:15:54 2024 +0200
Update erddap_data.py
- fix bug mal-formatting url for ref dataset
commit c9eb9a34d1ab546a151f1ef9c7719af1db1a464d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 14:19:18 2024 +0200
Update xarray.py
- fix bug in filter_researchmode
commit b6af5f61704a7a5cc34a5dc171c6beb152fa69c0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 13:50:49 2024 +0200
Update mocked_http.py
move from pickle to json db file in tests data
commit d9746e5de6286cf39b484828d1ca366e17fd3553
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 13:50:15 2024 +0200
Update erddap_data.py
- removed BGC measurements constraints on the erddap request because it is too unstable
- latitude and longitude must not be NaN
- pres/temp/psal adjusted not nan in research mode in the erddap request
- fix bug in N_POINTS properties that was not using the effective URI to be fetched
commit 4ad0e784910c08eb14b6760789dbca805aaade85
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 10:40:13 2024 +0200
Update erddap_data.py
- fix bug where by in research mode URL was still using pres instead of pres_adjusted
commit ca18b0d0d6940addfe3e679148ec7e58857a218b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 10:39:25 2024 +0200
Re-activate mock server with erddap tests
commit dc3ab40d408d00105b0c6ef0a3006f015a46d564
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 10:38:47 2024 +0200
Improve coverage
commit 044602adb32357ef47e101a8b9526eb0bbc6a8b3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 19 10:38:32 2024 +0200
Update tutorial.py
commit 1aa3ed452d646025c56ef9e1fc3927c03bdf459b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 18 14:13:49 2024 +0200
Update proto.py
fix bug in data fetcher proto sha not unique for different user modes
commit 02264fdc24c9b650edce3bf3c6db9619370d14b1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 18 14:13:12 2024 +0200
Update xarray.py
commit 654b53a1f7241cfada94f1640f8578364c0466a8
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 17 09:33:08 2024 +0200
Use real erddap server in CI tests
commit 8102bfef6268ddfe6bec72296deae33d7bd21234
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 16 11:46:17 2024 +0200
Remove US GODAE ftp references
Closes #320
commit 6f761426aa3d874dcf28c4cfb70f09fdf69ea480
Merge: d2bb38ba feecd02b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 16 11:29:34 2024 +0200
Merge branch 'master' into erddap-update
commit feecd02be81ee39e55f5aa32cfaf9db5e481d1cd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 17:22:01 2024 +0200
Update whats-new.rst
commit 814ae7fa7fa6a739189970459af307b3bbc0997f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 16:17:12 2024 +0200
Update filesystems.py
commit 3655bc80064ec8e0dc4fecd8f9b5a951158c8654
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 16:17:09 2024 +0200
update test data
commit 8c38f1357d792ab9df2ebe878fd4e5e421603d5c
Merge: 16762975 470a3d9f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 15:15:05 2024 +0200
Merge branch 'master' into bgc-2024
commit d2bb38ba128f05841b4f333ec3db92c4384805af
Merge: e76d2e58 470a3d9f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 14:24:30 2024 +0200
Merge branch 'master' into erddap-update
commit 470a3d9f9cfa297d249364929499ca0ff8d86618
Merge: 542fd241 70c01269
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 14:21:28 2024 +0200
Merge pull request #326 from euroargodev/gdac-amazons3
S3 support
commit 70c0126990972afb864342e42ad7e390f39fe4ae
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 12:58:20 2024 +0200
Upper bound on xarray < 2024.3
Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex'
commit ed29bd0e9d20e6cebdd1e524a4ba0b48ff609789
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 11:25:44 2024 +0200
Upper bound on xarray < 2024.4
Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex'
commit a89b8c90e5ca28a74390381d746e43b661a27ccb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 10:34:12 2024 +0200
upper bound on xarray < 2024.5
Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex'
commit e76d2e5819f239eeb30a2249a84e72b15c2d0286
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 10:32:22 2024 +0200
Update erddap_refdata.py
commit 8ca8cd160016b503901e329464534241e768837a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 12 10:00:53 2024 +0200
Upper bound on xarray
AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex'
https://github.com/pydata/xarray/issues/8909
commit 6b8b3a816554d2bca7ffe33040caff12e2502ca4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 15:56:52 2024 +0200
Update xarray.py
fix upstream numpy.exceptions.DTypePromotionError
commit 4f27289f89d609e287affb7aa08c5df0fb5f20da
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 15:56:41 2024 +0200
Update gdacftp_data.py
commit ef055ee76be77180b6f6a6c0b110d627d29e8f65
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 15:56:39 2024 +0200
Update __init__.py
commit 8af82c7ed47b67f744b36fef2adb17f3fe0fd97e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 15:10:40 2024 +0200
Update gdacftp_data.py
commit 8c0b32d04d40a95be90a6f985bfc10d1d6496e67
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 14:27:13 2024 +0200
Update test_stores_index.py
commit c18b2ad0140b238162df637102b5dc071f43e04e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 14:26:57 2024 +0200
Update test_stores_index.py
commit 6901a9c64351ff6dde76cbe396ded7427661e9bb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 14:26:29 2024 +0200
Update test_stores_index.py
commit d49a3291e14d82090a33a48839ece9dc26d65070
Merge: 50760d16 d702ada5
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 14:24:51 2024 +0200
Merge branch 'erddap-update' of https://github.com/euroargodev/argopy into erddap-update
commit 50760d16a4c88dce3b2f0f446316dec0e9c510cd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jul 11 14:24:48 2024 +0200
Update erddap_data.py
commit d702ada5488b86a8b9a06fcac5a7163ba012582e
Merge: 98429124 542fd241
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 16:55:26 2024 +0200
Merge branch 'master' into erddap-update
commit 9842912453062284242aebf3d86a08371d050e64
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 16:52:11 2024 +0200
drop support for erddapy < 0.8
commit e677992b602f3db3500929f6dd9cf5a75de90425
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 16:43:48 2024 +0200
Update filesystems.py
commit 59912390357de72decc54f100c3298403735530a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 16:38:17 2024 +0200
Update argo_index_proto_s3.py
commit fbdbb1f1073f1dcd2e5bbd13bdf04169f9ebfbfa
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 16:35:58 2024 +0200
misc [skip-ci]
commit 50560f7da051182b814cd68cc204aba18c5899c5
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 15:53:14 2024 +0200
[skip-ci]
commit 0443ae441605609a595318e6f98d242ebb0a5869
Merge: 77260939 542fd241
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 14:54:03 2024 +0200
Merge branch 'master' into gdac-amazons3
commit 542fd241c99b3a11e2448c7bf5b4da99c11f7edd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 14:49:07 2024 +0200
Update workflows to access s3 creds
commit 77260939b34efcba1c391994e86207c8897b3493
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 14:46:24 2024 +0200
update workflow to access s3
commit 26e06e99a9bf160588a16e9fbe925e72f31081e7
Merge: a357439e 0c8d7e42
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 11:20:57 2024 +0200
Merge pull request #371 from bkatiemills/argovisV2
basic integration of argovis API 2.x
commit 0c8d7e42f7f54f2a975c56a4ae88ff428ce6fb55
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:50:01 2024 +0200
Update whats-new.rst
commit 604af4e3eefa53a38e75eb8cf4d1cf1a4c8dc582
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:47:15 2024 +0200
Update argovis_data.py
commit a2e47a2370e7333cf9afdd2d880e6b513411a24c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:37:31 2024 +0200
Update argovis_data.py
commit 86c042e95fea5f504c4d64fd2ee8340df0d83963
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:37:22 2024 +0200
Update options.py
points to argovis key generator
commit f51d4485a5541c42362ac78b057d6e2494d8dbfd
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:28:53 2024 +0200
Update filesystems.py
- fix bug in merging user arguments for the http file store instance
commit f49aaed3a764216ac09886832776a1854d8890cb
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jul 10 09:07:06 2024 +0200
Update options.py
Add missing checker for new `argovis_api_key` option
commit 3747d251ee1054fea217f5cac11fe2ceb307fa5b
Merge: 9b053b67 6037f6ad
Author: bkatiemills <you@example.com>
Date: Tue Jul 9 14:42:44 2024 -0400
Merge branch 'argovisV2' of https://github.com/bkatiemills/argopy into argovisV2
commit 9b053b67033578fe16e3a394b595b922ad79f31a
Author: bkatiemills <you@example.com>
Date: Tue Jul 9 14:38:46 2024 -0400
argovis API key injection
commit b88de82a631b17a501b4919c674c3042aeb50f4a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 18:26:59 2024 +0200
misc
- local tests ok
commit 6037f6ad8c3bc759bcd8eb8957bd148051a7f882
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 16:41:31 2024 +0200
Update whats-new.rst
commit 3d2aecfe4d285d1a9a8386505cc13fcfea7e65d3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 16:33:34 2024 +0200
Removed obsolete filter_domain
because https://github.com/euroargodev/argopy/issues/48 is closed
commit 16762975b657b56f1c5c650e5e8bd6941cda4ec3
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 12:06:06 2024 +0200
Add URL registry for erddap fetcher
- force the indexfs to use the httpstore from the fetcher
- add a registry in the httpstore
commit c79cb360d7d87b2719a326e7f6517aed1d0dff7a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 11:27:49 2024 +0200
Update erddap_data.py
- add checker on BGC parameters provided in params and measured, raises a ValueError if parameters is not found
commit 29ddf8723021bba621c809aa117f264842a08698
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 9 11:01:07 2024 +0200
misc
- refactor _bgc_vlist_requested to _bgc_vlist_params for consistancy
- improve docstrings
- turn off mocked server for erddap tests
commit c4e8c9c36406e4d9d145e39a1be5e50a295213bc
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 17:48:03 2024 +0200
fix CI tests
commit 84aeef29a4b4d4491309405bd3bb022c59aacabe
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 17:30:25 2024 +0200
removed unused raiseNoDataLeft
commit f5df4e7bd1abceaabe669af54fdec5feeab55067
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 17:21:35 2024 +0200
Apply Black on xarray
commit e959d7fd7bdc9f6f7b07c122dfbb8c8e8c8da662
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 17:12:35 2024 +0200
Better docstrings
commit 3c4b355a2e6d0ce31f1379cb43ffbb14dcf8efac
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 17:12:10 2024 +0200
Update fetchers to use correct filter_data_mode
commit 361f12cb1abd5b8c076e445ace275e77f761ea2d
Merge: 83b95018 a357439e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 16:42:42 2024 +0200
Merge branch 'master' into bgc-2024
commit 83b9501849254f826830fcb760ae5170185b2689
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 16:41:35 2024 +0200
Add deprecation policy for filter_data_mode
- mark 'filter_data_mode' as deprecated while preserving legacy behavior
- new, correct 'filter_data_mode' is temporarily at 'filter_data_mode'
commit a357439e44f411bd04303ab810a9ad246fd51f60
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 8 16:31:05 2024 +0200
Upgrade deprecated decorator
- allows to be ignored from some caller
- introduce version argument
commit ffa3ff243354a0fad98cba9c830d8b1f2046b6e5
Author: bkatiemills <you@example.com>
Date: Fri Jul 5 14:11:37 2024 -0400
box region queries
commit 9aa1ba36e2278cdb001c316c227328daf7389c0a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 5 15:26:57 2024 +0200
Fix missing lists from utils
commit 9a7c4188cffaedc2601018f84e21bb4a40a9a232
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jul 5 15:11:37 2024 +0200
catching up
- allow for ds='bgc-s' in place of ds='bgc'
- new decorator raiseNoDataLeft
- better docstrings
- fix llcache/lscache cli
- DataNotFound and NoDataLeft inherits from NoData
- some internal refactoring in facade
commit 41174a7db49dc48c3207dbf84c1aa08decb9eaef
Author: bkatiemills <you@example.com>
Date: Thu Jul 4 15:56:42 2024 -0400
provide correct liveness probe endpoint to api_server_check
commit f476f3ebe608dde67a3b88d4c285c378f0f73856
Author: bkatiemills <you@example.com>
Date: Tue Jul 2 12:40:38 2024 -0400
basic integration of argovis API 2.x
commit 0372f38fa8285b98dd4a7bfd908ce88d9e6fa7f4
Merge: d370d33c d5148290
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jul 2 10:10:11 2024 +0200
Merge pull request #370 from euroargodev/dependabot/pip/ipython-lte-8.26.0
pip prod(deps): update ipython requirement from <=8.25.0 to <=8.26.0
commit d370d33c2a1ca5a86992e214e642af1c4f0e46ac
Merge: fb3f9117 8978d83d
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jul 1 09:31:24 2024 +0200
Merge pull request #367 from green-coding-solutions/eco-ci-v4
Eco-CI v4.0-rc3
commit d51482906f073deb9412f4a2d03440cdaa8dc74f
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jul 1 04:28:30 2024 +0000
pip prod(deps): update ipython requirement from <=8.25.0 to <=8.26.0
Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](https://github.com/ipython/ipython/compare/5.0.0...8.26.0)
---
updated-dependencies:
- dependency-name: ipython
dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
commit 8978d83d18e073c6fced620f4beb7205a4d742c0
Author: Arne Tarara <arne@datafuse.de>
Date: Sat Jun 29 21:53:30 2024 +0200
Removed pr-comment and PR write permissions
commit fb3f9117545c27b30702444806a93e3bfaff454c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 21 14:39:48 2024 +0200
New impact section in the doc
commit bfe9e91ecae3846736c8b0b8e7ae335110c6aa70
Author: Arne Tarara <arne@datafuse.de>
Date: Tue Jun 18 15:14:21 2024 +0200
UPSTREAM added in other workflow
commit 9df2cb0f64816b7a11911b0e71009966dc22000d
Author: Arne Tarara <arne@datafuse.de>
Date: Tue Jun 18 15:12:18 2024 +0200
Moved to v4.0-rc3; Adding PR-Comments; removed supeflous UUID mentions; Added machine-uuid
commit 49f5ea2f01fd7d1c2b94d773b6df611cb712ad8b
Merge: 233ed147 b3daa650
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 18 10:44:18 2024 +0200
Merge pull request #366 from euroargodev/dependabot/github_actions/codecov/codecov-action-4.5.0
Bump codecov/codecov-action from 4.4.1 to 4.5.0
commit b3daa6506fed9829293baa8de5fda02e31b51c8a
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jun 17 04:34:22 2024 +0000
Bump codecov/codecov-action from 4.4.1 to 4.5.0
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.4.1 to 4.5.0.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/codecov/codecov-action/compare/v4.4.1...v4.5.0)
---
updated-dependencies:
- dependency-name: codecov/codecov-action
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
commit a23e93f71d176f50308a50feb9875bde86b98785
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 18:48:13 2024 +0200
Update argo_index_proto_s3.py
commit 38d4a785244d75a681a3aba318ed4a4e679f31ab
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 18:05:18 2024 +0200
Update argo_index_proto_s3.py
commit b43fbebbb79cf3ca961c09ec2abc7496e9209d70
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 15:32:48 2024 +0200
Update argo_index_proto_s3.py
commit 68e362b06081e00d92e71eb68d4cd85a1f0e16e4
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 15:30:07 2024 +0200
Update argo_index_proto_s3.py
more log info for CI tests debug
commit 233ed147e39cbb5805e7fc73108f90c09abf962b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 10:58:03 2024 +0200
Fix bug in the facade
commit 9055e71e89758c770a3aeed641102b4121e8dcb7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 10:55:50 2024 +0200
Fix bug in the facade
commit a7cff79f0671b636cb220dbbaba519ec0bd7386a
Merge: f6269e9f 9de84079
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 09:58:38 2024 +0200
Merge branch 'master' into gdac-amazons3
commit f6269e9fd361406177d26dbf73518cd97b76201a
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 14 09:41:27 2024 +0200
Update argo_index_proto_s3.py
commit c8d546d97d4b444e2547680264baa759d923157c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 13 17:45:14 2024 +0200
Add new bgc-s and ngc-b dataset
This shall allows to make the difference between the synthetic and the other BGC files
commit 148beb06e1308d7b7d111abd90e15e78f83a2795
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 13 16:22:29 2024 +0200
New split_data_mode transform
so that we can handle PARAMETER_DATA_MODE
commit 1ea391e617d9db38276d529c786985b27b02a196
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 13 16:21:52 2024 +0200
Update canyon_med.py
commit 2dde63be5cee80a5f66b70a7e40345ec51344193
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 13 16:21:36 2024 +0200
Update gdacftp_data.py
Preserve original netcdf file attrs
commit a7231f36588ad5b0cf18d36adde2c808368e76d7
Merge: 9bc14033 8d59c03e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 13 09:39:15 2024 +0200
Merge branch 'bgc-2024-canyon' into bgc-2024
commit 9bc14033e504181f779cdc00fb5aa77d3c6974ae
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 17:08:21 2024 +0200
Fix docstrings
commit 8d59c03ea211dbe2d0a1e921ecec3c8e6460f3f1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 16:55:33 2024 +0200
Update canyon_med.py
commit d5bc78c6f0c30cc2f36a8dc539c90cc433706463
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 16:45:24 2024 +0200
Add mask to ensure that input measurements are in the Mediterranean Sea
commit 2fa392e645143d3e679b37f6a5049b85475a9ab7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 16:18:49 2024 +0200
Update extensions sub-module
- Create proto class for inheritance
commit 79b98a7a7008af59a8a5ba62eb1ae1fa1bc49120
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 16:00:24 2024 +0200
Update documentation
commit 6a4633d55670ab1f114147622574c5710f95a527
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 16:00:01 2024 +0200
New 'extensions' submodule
- In this sub-module, we shall find all methods/classes that will be used an "extension" to the xarray Argo accessor
- The goal is to facilitate the dev of more extensions for new comers
- Refactor Canyon-MED in the new 'extensions' submodule
commit cc7a86994855924d7c0d430e42b5cec26382d705
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 10:17:24 2024 +0200
Bring CanyonMED to argopy !
commit d3a90602d1fc4d5f135c18a7e2ac2779fa9d0652
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 10:17:10 2024 +0200
misc
commit ce11e5008fb31cde981f5e3052ab2035f588b1ab
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 12 10:16:41 2024 +0200
New register_argodataset_accessor
This would be a simple mechanism to provide extensions to the argo xarray accessor
commit e6ade192f48095788c1e46b91e55e119a5d8ff07
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 19:46:38 2024 +0200
CANYON-MED NN weights
commit afbe4d9cc615cb9284bdddeadffd181fb1f8f4ab
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 19:45:03 2024 +0200
kick start
commit f552cb98ac77a0989db2983396580fbe5aa538a7
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 19:38:52 2024 +0200
Add support BGC HDF5 netcdf file
commit bac1387b226de5ee7c9b36ee72e3b4a8c87bcd27
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 17:47:58 2024 +0200
fix bugs here and there
commit 1657ed02d4acc7fb9d2a21db4e8e41d7fed73095
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 13:29:19 2024 +0200
Improve filters
commit a569adc58f1f492039459f10d656909507045180
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 13:29:06 2024 +0200
more BGC var/param listing
- list_bgc_s_variables, list_bgc_s_parameters
- list_radiometry_variables, list_radiometry_parameters
- list_core_parameters
commit f047945e19c3617e9f603b025dc7dabb519d5e8e
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 13:27:01 2024 +0200
Update fetchers.py
- add postprocessors for BGC
commit cf38c5b6a11deaf80f05cd3fd716fcb93dd6d7b0
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 13:26:30 2024 +0200
Update proto.py
Update filter_variables to support BGC
commit 63d12722569b99b933bd367c8e75b86bfd9c272b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Tue Jun 11 13:26:00 2024 +0200
Add user_mode properties to low-level fetchers
commit 7e0bb4d3dfe0ee3f9e0f0bf8f53728151ded343f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jun 10 18:58:46 2024 +0200
New filter_data_mode, not backward compatible
- Add filter_data_mode that really filter the data according to their DATA MODE (previous version was actually merging PARAM and PARAM_ADJUSTED, this is now done by transform_data_mode
commit 5a96ff6e8470710512b6ff720a74bd05480b309c
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jun 10 18:53:32 2024 +0200
Cleaner postprocessor definition in the facade
commit da89110c7c90fba5516f03952d2ea83194e5eff2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jun 10 09:26:19 2024 +0200
Update erddap_data.py
- fix list of bgc variables to request and their constraints
- reduced final checks in to_xarray for bgc to filter_measured
- delete filter_points, new filter_measured
- filter_measured applies to <PARAM> OR <PARAM>_ADJUSTED
commit 930fc6413ae95f0dfd6b6411e1d4e89b90aaa63f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jun 10 09:06:44 2024 +0200
docstring
commit fe59468fce557f1c70c919d661bb2289b5082e35
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Mon Jun 10 09:06:31 2024 +0200
Update fetchers.py
- fix bug in to_index data fetcher method whereby the index could differ from the dataset
commit e22be870214102684494230aa9335e66c201c76b
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 16:05:15 2024 +0200
Update test data
commit 2265e6205c238e4cfa067367068a36fc61369f89
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 15:26:05 2024 +0200
breaking change: renamed argo.filter_data_mode into argo.transform_data_mode
commit 5592efcb59a41cb5ef68de382f6689df49e1bad1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 14:51:43 2024 +0200
New xarray.argo.transform_data_mode
- based on new utility merge_param_with_param_adjusted
commit 861ff3148cdedf894c2270059f8a2471a982668e
Merge: 6696a73d 9de84079
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 10:34:34 2024 +0200
Merge branch 'master' into bgc-2024
commit 9de84079c2a7aa99f7883690519b3cd3d53461a2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 10:34:20 2024 +0200
[skip-ci]
commit be454e15ea08cd9deacb248391040a08b8db2301
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 10:29:42 2024 +0200
Update doi_snapshot.py
commit 4bc51bdc61bf1f3a031df9d26fd7f3ce0293b96f
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Fri Jun 7 10:16:29 2024 +0200
Add ArgoDOI to argopy API documentation
commit 6696a73dc3623e15435e4168b87695184297adb2
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 6 16:33:27 2024 +0200
Update xarray.py
- don't remember why these variables were included, not consistant ...
commit a9561e4f158dc18c967e20f04756d1874768ac64
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 6 16:33:04 2024 +0200
Update erddap_data.py
- start support for more user mode in BGC
commit b378da1d05e660e6ef618316352868007b59bc26
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Thu Jun 6 16:31:31 2024 +0200
Add support for the "aux" index file + bug fix
- fix bug with shortcuts in ArgoIndex file and convention
- the ArgoIndex now support the "etc/argo-index/argo_aux-profile_index.txt" index file
commit b9800a69087b223e8d3f9df92b113a1b30d87091
Author: Guillaume Maze <gmaze@ifremer.fr>
Date: Wed Jun 5 09:47:16 2024 +0200
Update erddap_data.py
commit 229de718d415a7c4f378c395bc179461ed6798e1
Author: Guillaume Maze <gmaze@ifremer.fr>
Date:…
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Address #381