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<h1 class="title toc-ignore">Publications</h1>
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<p><br></p>
<div id="peer-reviewed-publications" class="section level3">
<h3>Peer-Reviewed Publications:</h3>
<p><sup>†</sup> = Co-first author; <sup>‡</sup> = Corresponding author</p>
<div id="section" class="section level4">
<h4>2020</h4>
<ol style="list-style-type: decimal">
<li>Srikanth K., A. Adesemoye, G. Yuen, J. Volesky, S.E. Everhart<sup>‡</sup>. 202X. Origin of agricultural plant pathogens: Diversity and pathogenicity of Rhizoctonia fungi associated with native prairie grasses in the Sandhills of Nebraska. <em>PLoS ONE.</em> Accepted pending revision.</li>
<li>Koehler‐Cole, K., S.E. Everhart, Y. Gu, C.A. Proctor, M. Marroquin‐Guzman, D.D. Redfearn, and R.W. Elmore. 2020. Is allelopathy from winter cover crops affecting row crops?. <em>Agricultural & Environmental Letters</em>, 5(1), e20015.</li>
<li>Olgun, T., S.E. Everhart, T. Anderson, and J. Wu-Smart. 2020. Comparative analysis of viruses in four bee species collected from agricultural, urban, and natural landscapes. <em>PLoS ONE</em>. Accepted.</li>
<li>Sciarresi, C., C. Proctor, E.R. Haramoto, L.E. Lindsey, G.I. Carmona, R. Elmore, S. Everhart, W. Looker, M. Marroquin-Guzman, J. McMechan, J. Wehrbein, R. Werle, and M. Salmeron. 2020. Evaluating short-season soybean management adaptations for cover crop rotations with a crop simulation model. <em>Field Crops Research</em>. Accepted.</li>
<li>Dundore-Arias, E.A. Eloe-Fadrosh, L.M. Schriml, G.A. Beattie, F.P. Brennan, P.E. Busby, R.B. Calderon, S.C. Castle, J.B. Emerson, S. Everhart, K. Eversole, K. Frost, J. Herr, A.J. Huerta, A.S. Iyer-Pascuzzi, A. Kalil, J.E. Leach, J. Leonard, J.E. Maul, B. Prithiviraj, M. Potrykus, N.R. Redekar, J.A. Rojas, K.A.T. Silverstein, D. Tomso, S. Tringle, B. Vinatzer, and L. Kinkel. 2020. Community-driven Metadata Standards for Agricultural Microbiome Research. <em>Phytobiomes</em>. In Press</li>
</ol>
</div>
<div id="section-1" class="section level4">
<h4>2019</h4>
<ol start="6" style="list-style-type: decimal">
<li>Dale, A.L., N. Feau, S.E. Everhart, G. Bilodeau, B. Dhillon, J. Tabima, C. Brasier, N. Grünwald, and R.C. Hamelin. 2019. Mitotic recombination and a two-speed genome drive evolution in asexual lineages of the sudden oak death pathogen <em>Phytophthora ramorum. mBio</em>.</li>
<li>Ajayi, O.O., S.E. Everhart, P.J. Brown, A.U. Tenuta, A.E. Dorrance, and C. Bradley. 2019. Genetic structure of <em>Rhizoctonia solani</em> AG-2-2IIIB from soybean in Illinois, Ohio, and Ontario. <em>Phytopathology</em> 109:2132–2141.</li>
<li>Miorini, T.J.J., Z.N. Kamvar, R. Higgins, C.G. Raetano, J.R. Steadman, and S.E. Everhart<sup>‡</sup>. 2019. Variation in pathogen aggression and cultivar performance against <em>Sclerotinia sclerotiorum</em> in soybean and dry bean from Brazil and the U.S. <em>Tropical Plant Pathology</em>. 44:73–81.</li>
<li>Kamvar, Z.N., and S.E. Everhart<sup>‡</sup>. 2019. Something in the agar does not compute: On the discriminatory power of mycelial compatibility in <em>Sclerotinia sclerotiorum</em>. <em>Tropical Plant Pathology</em>. 44:32–40.</li>
<li>Pannullo, A.P., Z.N. Kamvar, T.J.J. Miorini, J.R. Steadman, and S.E. Everhart<sup>‡</sup>. 2019. Genetic variation and structure of <em>Sclerotinia sclerotiorum</em> populations from soybean in Brazil. <em>Tropical Plant Pathology</em> 44:53–64.</li>
</ol>
</div>
<div id="section-2" class="section level4">
<h4>2018</h4>
<ol start="11" style="list-style-type: decimal">
<li>Nieto-López, E. H., S.E. Everhart, V. Ayala-Escobar, M. Camacho-Tapia, N.B. Lima, R. Nieto-Angel, and J.M. Tovar-Pedraza. 2018. First report of Colletotrichum gloeosporioides causing anthracnose of tejocote (Crataegus gracilior) fruits in Mexico. Plant Disease. 102:1855. [W; Cited by 0; Impact Factor = 3.02; H-index = 91]</li>
<li>Bogo, A., C.C. Comparin, R.M. Valdebenito Sanhueza, P. Ritschel, R.T. Casa, F.N. Silva, S.E. Everhart. 2018. Characterization of <em>Neofabraea actinidiae</em> and <em>N. brasiliensis</em> as causal agents of apple bull’s-eye rot in southern Brazil. <em>Canadian Journal of Plant Pathology</em> <a href="https://doi.org/10.1080/07060661.2017.1421588" class="uri">https://doi.org/10.1080/07060661.2017.1421588</a></li>
</ol>
</div>
<div id="section-3" class="section level4">
<h4>2017</h4>
<ol start="13" style="list-style-type: decimal">
<li>Kamvar, Z.N., B.S. Amaradasa, R. Jhala, S. McCoy, J.R. Steadman, S.E. Everhart<sup>‡</sup>. 2017. Population structure and phenotypic variation of <em>Sclerotinia sclerotiorum</em> from dry bean (<em>Phaseolus vulgaris</em>) in the United States. <em>PeerJ</em> 5:e4152 <a href="https://doi.org/10.7717/peerj.4152" class="uri">https://doi.org/10.7717/peerj.4152</a></li>
<li>Grunwald, N.J., S.E. Everhart, B.J. Knaus, and Z.N. Kamvar. 2017. Best practices for population genetic analyses. <em>Phytopathology</em> 107:1000-1010. <a href="https://doi.org/10.1094/PHYTO-12-16-0425-RVW" class="uri">https://doi.org/10.1094/PHYTO-12-16-0425-RVW</a></li>
<li>Dowling, M., G. Schnabel, H. Boatwright, and S.E. Everhart<sup>‡</sup>. 2017. Novel gene-sequence markers for isolate tracking within <em>Monilinia fructicola</em> lesions. <em>Pest Management Science</em>. <a href="https://doi.org/10.1002/ps.4544" class="uri">https://doi.org/10.1002/ps.4544</a></li>
<li>Mirorini, T.J.J., C.G. Raetano, and S.E. Everhart<sup>‡</sup>. 2017. Control of white mold of dry bean and residual activity of Fungicides applied by chemigation. <em>Crop Protection</em> 94:192-202.</li>
</ol>
</div>
<div id="section-4" class="section level4">
<h4>2016</h4>
<ol start="17" style="list-style-type: decimal">
<li>Amaradasa, B.S., and S.E. Everhart<sup>‡</sup>. 2016. Effects of sublethal <em>Fungi</em>cides on mutation rates and genomic variation in fungal plant pathogen, <em>Sclerotinia sclerotiorum</em>. <em>PLoS ONE</em>. 11 (12): e0168079. <a href="https://doi.org/10.1371/journal.pone.0168079" class="uri">https://doi.org/10.1371/journal.pone.0168079</a>.</li>
<li>Dugan, F.M., and S.E. Everhart. 2016. Cryptic species: A leitmotif of contemporary mycology has challenges and benefits for plant pathologists. <em>Plant Health Progress</em>. <a href="https://doi.org/10.1094/PHP-RV-16-0046" class="uri">https://doi.org/10.1094/PHP-RV-16-0046</a></li>
<li>de Bem, B.P., A. Bogo, S.E. Everhart, R.T. Casa, M.J. Goncalves, J.L. Marcon, L.R. Rufato, F.N. Silva, R. Allebrandt, I.C. da Cunha. 2016. Effect of four training systems on the temporal dynamics of downy mildew in two grapevine cultivars in southern Brazil. <em>Topical Journal of Plant Pathology</em>. <a href="https://doi.org/10.1007/s40858-016-0110-8" class="uri">https://doi.org/10.1007/s40858-016-0110-8</a>.</li>
<li>Tabima J.F., S.E. Everhart, M.M. Larsen, A.J. Weisberg, Z.N. Kamvar, M.A. Tancos, C.D. Smart, J.H. Chang, and N.J. Grünwald. 2016. Microbe-ID: An open source toolbox for microbial genotyping and species identification. <em>PeerJ</em> 4:e2279 <a href="https://doi.org/10.7717/peerj.2279" class="uri">https://doi.org/10.7717/peerj.2279</a></li>
<li>Dowling, M., P.K. Bryson, H. Boatwright, J.R. Wilson, Z. Fan, G. Schnabel, S.E. Everhart, and P. Brannen. 2016. Effect of Fungicide application on <em>Monilinia fructicola</em> population diversity and transposon movement. <em>Phytopathology</em> 103:1504-1512. <a href="https://doi.org/10.1094/PHYTO-03-16-0127-R" class="uri">https://doi.org/10.1094/PHYTO-03-16-0127-R</a></li>
</ol>
</div>
<div id="section-5" class="section level4">
<h4>2015</h4>
<ol start="22" style="list-style-type: decimal">
<li>Chen, F., S.E. Everhart<sup>†</sup>, P.K. Bryson, C.L., X. Song, X.L., G. Schnabel. 2015. Fungicide induced transposon movement in Monilinia fructicola. Fungal Genetics and Biology 85:38-44.</li>
<li>Everhart, S.E., and H. Scherm. 2015. Clonal disease foci of Monilinia fructicola during brown rot epidemics within peach tree canopies. <em>Phytopathology</em> 105:542-549.</li>
<li>de Bem, B.P., Bogo, A., S. Everhart, R.T. Casa, M.J. Goncalves, J.L.M. Filho, and I.C. da Cunha. 2015. Effect of Y-trellis and vertical shoot positioning training systems on downy mildew and botrytis bunch rot of grape in highlands of southern Brazil. <em>Scientia Horticulturae</em> 185:162-166.</li>
</ol>
</div>
<div id="section-6" class="section level4">
<h4>2014</h4>
<ol start="25" style="list-style-type: decimal">
<li>Schnabel, G., F. Chen, S.E. Everhart, W.C. Bridges and X.L. Liu. 2014. Studies on sensitivity reduction in solo and mixture treatments and Fungicide-induced mutagenesis in <em>Monilinia fructicola</em>. In: H.W. Dehne, H.B. Deising, U. Gisi, B. Fraaije, U. Gisi, D. Hermann, A. Mehl, E.C. Oerke, P.E. Russel, G. Stammler, K.H. Kuck, H. Lyr (Eds). “Modern Fungicides and Antifungal Compounds”, Vol. VII, pp 263-268. 2014 Deutsche Phytomedizinische Gesellschaft, Braunschweig, ISBN: 978-3-941261-13-6.</li>
</ol>
</div>
<div id="section-7" class="section level4">
<h4>2013</h4>
<ol start="26" style="list-style-type: decimal">
<li>Everhart, S.E., A. Askew, L. Seymour, and H. Scherm. 2013. Spatio-temporal patterns of pre-harvest brown rot epidemics within individual peach tree canopies. <em>European Journal of Plant Pathology</em> 135: 499–509.</li>
</ol>
</div>
<div id="section-8" class="section level4">
<h4>2012</h4>
<ol start="27" style="list-style-type: decimal">
<li>Everhart, S.E., A. Askew, L. Seymour, T.C. Glenn, and H. Scherm. 2012. Spatial patterns of brown rot epidemics and development of microsatellite markers for analyzing fine-scale genetic structure of <em>Monilinia fructicola</em> populations within peach tree canopies. Online. <em>Plant Health Progress</em> <a href="https://doi.org/10.1094/PHP-2012-0723-04-RS" class="uri">https://doi.org/10.1094/PHP-2012-0723-04-RS</a></li>
</ol>
</div>
<div id="section-9" class="section level4">
<h4>2011</h4>
<ol start="28" style="list-style-type: decimal">
<li>Everhart, S.E., A. Askew, L. Seymour, I.J. Holb, and H. Scherm. 2011. Characterization of three-dimensional spatial aggregation and association patterns of brown rot symptoms within intensively mapped sour cherry trees. <em>Annals of Botany</em> 108: 1195–1202.</li>
</ol>
</div>
<div id="section-10" class="section level4">
<h4>2010</h4>
<ol start="29" style="list-style-type: decimal">
<li>Everhart<sup>‡</sup>, S.E. 2010. Collection and identification of grapevines (<em>Vitis</em>) from the tree canopy of select forests in the southeastern United States. Castanea 75: 141–149.</li>
<li>Keller, H.W., and S.E. Everhart 2010. Importance of Myxomycetes in biological research and teaching. <em>Fungi</em> 3(1): 13–27.</li>
</ol>
</div>
<div id="section-11" class="section level4">
<h4>2009</h4>
<ol start="31" style="list-style-type: decimal">
<li>Everhart, S.E., J.S. Ely, and H.W. Keller. 2009. Evaluation of tree canopy epiphytes and bark characteristics associated with corticolous myxomycetes. <em>Botany</em> 87: 509–517.</li>
<li>Keller, H.W., S.E. Everhart, M. Skrabal, and C.M. Kilgore. 2009. Tree canopy biodiversity in temperate forests: Exploring islands in the sky. <em>Southeastern Biology</em> 56: 52–74.</li>
</ol>
</div>
<div id="section-12" class="section level4">
<h4>2008</h4>
<ol start="33" style="list-style-type: decimal">
<li>Everhart, S.E., and H.W. Keller. 2008. Influence of bark pH on the occurrence and distribution of tree canopy myxomycete species. <em>Mycologia</em> 100: 191–204.</li>
<li>Everhart, S.E., and H.W. Keller. 2008. Life history strategies of corticolous myxomycetes: The life cycle, fruiting bodies, plasmodial types, and taxonomic orders. <em>Fungal Diversity</em> 29: 1–16.</li>
<li>Keller, H.W., C.M. Kilgore, S.E. Everhart, G. Carmack, C. Crabtree, and A. Scarborough. 2008. Myxomycete plasmodia and fruiting bodies: Unusual occurrences and user friendly study techniques. <em>Fungi</em> 1: 24–37.</li>
<li>Keller, H.W., and S.E. Everhart 2008. Myxomycete species concepts, monotypic genera, the fossil record, and additional examples for good taxonomic practice. <em>Revista Mexicana de Micologia</em> 27: 9–19.</li>
<li>Kilgore, C.M., H.W. Keller, S.E. Everhart, A. Scarborough, K. Snell, M. Skrabal, C. Pottorff, and J.S. Ely. 2008. Tree canopy research and student experiences using the double rope climbing method. <em>Journal of Botanical Research Institute of Texas</em> 2: 1309–1336.</li>
</ol>
<p><br></p>
</div>
</div>
<div id="books-chapters-and-r-packages" class="section level3">
<h3>Books, Chapters, and R packages:</h3>
<ol start="38" style="list-style-type: decimal">
<li>Keller, H.W., S.E. Everhart, and C.M. Kilgore. 2017. The Myxomycetes: Biology, life cycle, genetics and reproduction. In: Stephenson, S. and C. Lado (eds) “Myxomycetes: Biology, Systematics, Biogeography and Ecology”, Elsevier, Atlanta, GA.</li>
<li>Kamvar, Z.N., Tabima, J.F., Everhart, S.E., Brooks, J.C., Krueger-Hadfield, S.A., Sotka, E. and Grunwald, N.J., 2016. Package ‘poppr’. <a href="https://cran.r-project.org/web/packages/poppr/index.html" class="uri">https://cran.r-project.org/web/packages/poppr/index.html</a></li>
<li>Grunwald, N.J., Z.N. Kamvar, and S.E. Everhart. 2015. Population Genetics in R. Online book: <a href="http://grunwaldlab.github.io/Population_Genetics_in_R/" class="uri">http://grunwaldlab.github.io/Population_Genetics_in_R/</a></li>
<li>Everhart, S.E., T.F. Tabima, and N.J. Grünwald. 2014. <em>Phytophthora ramorum</em>. In: Dean, R.A., A. Lichens-Park, and C. Kole (eds) “Genomics of Plant Associated Fungi and Oomycetes”, Springer, New York, NY. Pp. 159-174.</li>
</ol>
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