This commands selects an internal node of the input tree, and outputs the subtree starting at that node. The internal node is selected by its name, which can be specified with a regexp.
If several nodes match the given name/regexp, it does nothing, and print the name of matching nodes.
The only matching node must be an internal node, otherwise, it will do nothing and print the tip.
General command
Usage:
gotree subtree [flags]
Flags:
-i, --input string Input tree (default "stdin")
-n, --name string Name of the node to select as the root of the subtree (maybe a regex) (default "none")
-o, --output string Output tree file (default "stdout")
- Generate a random tree, annotate an internal node, and take the subtree starting at this internal node
clade.txt
clade:Tip2,Tip4,Tip7
gotree generate yuletree --seed 10 -o outtree1.nw
gotree annotate -m clade.txt -i outtree.nw | gotree subtree -n clade -o outtree2.nw
gotree draw svg -w 200 -H 200 -i outtree1.nw -o commands/subtree_1.svg
gotree draw svg -w 200 -H 200 -i outtree2.nw -o commands/subtree_2.svg
| Initial random Tree | Subtree |
|---|---|
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