notebooks/Dev_ClassGraph.ipynb

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 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Development Notebook: Visualization of Class Hierarchies\n",
    "This notebook was added to facilitate development & refactoring of the code base."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<style>.container { width:100% !important; }</style>"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "from IPython.core.display import display, HTML\n",
    "display(HTML(\"<style>.container { width:100% !important; }</style>\"))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "import ipycytoscape\n",
    "import networkx\n",
    "import inspect\n",
    "import theano\n",
    "import theano.tensor as tt"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "modules = [\n",
    "    # specify which modules to search:\n",
    "    theano,\n",
    "    tt\n",
    "]\n",
    "\n",
    "# lookup for module-wise colors\n",
    "# TODO: use shades of the parent color for sub-sub-modules\n",
    "COLORS = {\n",
    "    'theano.compile.function.pfunc': \"red\",\n",
    "    'theano.compile.function.types': \"red\",\n",
    "    'theano.compile.io': \"red\",\n",
    "    'theano.compile.mode': \"red\",\n",
    "    'theano.compile.ops': \"red\",\n",
    "    'theano.compile.profiling': \"red\",\n",
    "    'theano.configparser': \"purple\",\n",
    "    'theano.gof.cc': \"yellow\",\n",
    "    'theano.gof.fg': \"yellow\",\n",
    "    'theano.gof.graph': \"yellow\",\n",
    "    'theano.gof.link': \"yellow\",\n",
    "    'theano.gof.op': \"yellow\",\n",
    "    'theano.gof.params_type': \"yellow\",\n",
    "    'theano.gof.type': \"yellow\",\n",
    "    'theano.gof.utils': \"yellow\",\n",
    "    'theano.gradient': \"green\",\n",
    "    'theano.tensor.basic': \"blue\",\n",
    "    'theano.tensor.elemwise': \"blue\",\n",
    "    'theano.tensor.extra_ops': \"blue\",\n",
    "    'theano.tensor.io': \"blue\",\n",
    "    'theano.tensor.subtensor': \"blue\",\n",
    "    'theano.tensor.type': \"blue\",\n",
    "    'theano.tensor.type_other': \"blue\",\n",
    "    'theano.tensor.var': \"blue\",\n",
    "    'theano.updates': \"orange\",\n",
    "}\n",
    "\n",
    "# build a dictionary of all classes in the specified modules\n",
    "classes = {}\n",
    "for module in modules:\n",
    "    for name, mem in inspect.getmembers(module):\n",
    "        if inspect.isclass(mem):\n",
    "            classes[name] = mem\n",
    "            if not mem.__module__ in COLORS:\n",
    "                COLORS[mem.__module__] = \"pink\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "# helper functions for creating a NetworkX \n",
    "def add_or_create(G, cls):\n",
    "    name = cls.__name__\n",
    "    if name in G:\n",
    "        return\n",
    "    color = COLORS.get(cls.__module__, \"pink\")\n",
    "    G.add_node(name, name=name, label=name, color=color, tooltip=str(cls.__module__))\n",
    "    for superclass in cls.__mro__[1:2]:\n",
    "        add_or_create(G, superclass)\n",
    "        G.add_edge(superclass.__name__, name)\n",
    "\n",
    "def make_graph(classes):\n",
    "    G = networkx.DiGraph()\n",
    "    for name, cls in classes.items():\n",
    "        add_or_create(G, cls)\n",
    "    return G    "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
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      },
      "text/plain": [
       "CytoscapeWidget(cytoscape_layout={'name': 'dagre', 'rankDir': 'LR', 'nodeDimensionsIncludeLabels': True, 'spac…"
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     },
     "metadata": {},
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    }
   ],
   "source": [
    "G = make_graph(classes)\n",
    "cso = ipycytoscape.CytoscapeWidget(height=500)\n",
    "cso.graph.add_graph_from_networkx(G, directed=True)\n",
    "cso.set_style([\n",
    "    {\n",
    "        'selector': 'node',\n",
    "        'css': {\n",
    "            #'background-color': '#9dbaea',\n",
    "            'background-color': 'data(color)',\n",
    "            'content': 'data(name)',\n",
    "            'text-valign': 'center',\n",
    "            'font-size': 10,\n",
    "            #'color': 'white',\n",
    "            #'text-outline-width': 2,\n",
    "            #'text-outline-color': 'green',\n",
    "            #'background-color': 'green'\n",
    "        }\n",
    "    },\n",
    "    {'selector': 'node:parent', 'css': {'background-opacity': 0.333}},\n",
    "    {\n",
    "        'selector': ':selected',\n",
    "        'css': {\n",
    "            'background-color': 'black',\n",
    "            'line-color': 'black',\n",
    "            'target-arrow-color': 'black',\n",
    "            'source-arrow-color': 'black',\n",
    "            'text-outline-color': 'black'\n",
    "        }\n",
    "    },\n",
    "    {'selector': 'edge', 'style': {'width': 2, 'line-color': '#11479e'}},\n",
    "    {\n",
    "        'selector': 'edge.directed',\n",
    "        'style': {\n",
    "            'curve-style': 'bezier',\n",
    "            'target-arrow-shape': 'triangle',\n",
    "            'target-arrow-color': '#11479e'\n",
    "        }\n",
    "    },\n",
    "    {'selector': 'edge.multiple_edges', 'style': {'curve-style': 'bezier'}}\n",
    "])\n",
    "cso.layout.height = '1200px'\n",
    "cso.set_layout(name=\"dagre\", rankDir=\"LR\", nodeDimensionsIncludeLabels=True, spacingFactor=0.7)\n",
    "cso"
   ]
  },
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