diff --git a/codemcp/agno.py b/codemcp/agno.py
index bc20606..2e1c811 100644
--- a/codemcp/agno.py
+++ b/codemcp/agno.py
@@ -1,11 +1,12 @@
 import asyncio
 import sys
-from typing import Union
+from typing import Any, NoReturn, Union
 from urllib.parse import quote
 
 import click
-from agno.agent import Agent
-from agno.api.playground import PlaygroundEndpointCreate, create_playground_endpoint
+from agno.agent.agent import Agent
+from agno.api.playground import create_playground_endpoint
+from agno.api.schemas.playground import PlaygroundEndpointCreate
 from agno.cli.console import console
 from agno.cli.settings import agno_cli_settings
 from agno.tools.mcp import MCPTools
@@ -22,8 +23,8 @@ async def serve_playground_app_async(
     host: str = "localhost",
     port: int = 7777,
     reload: bool = False,
-    prefix="/v1",
-    **kwargs,
+    prefix: str = "/v1",
+    **kwargs: Any,
 ):
     import os
     import signal
@@ -60,7 +61,7 @@ async def serve_playground_app_async(
     console.print(panel)
 
     # Define our custom signal handler that exits immediately
-    def handle_exit(sig, frame):
+    def handle_exit(sig: int, frame: Any) -> NoReturn:
         logger.info(
             "Received shutdown signal - exiting immediately without waiting for connections"
         )
@@ -93,7 +94,7 @@ def handle_exit(sig, frame):
 async def main(hello_world: bool = False):
     async with MCPTools(f"{sys.executable} -m codemcp") as codemcp:
         # TODO: cli-ify the model
-        from agno.models.anthropic import Claude
+        from agno.models.anthropic.claude import Claude
 
         # from agno.models.google import Gemini
         agent = Agent(
diff --git a/codemcp/main.py b/codemcp/main.py
index af42b9c..3cdbcdc 100644
--- a/codemcp/main.py
+++ b/codemcp/main.py
@@ -14,18 +14,10 @@
 from starlette.routing import Mount
 
 from .mcp import mcp
-from .tools.chmod import chmod  # noqa: F401
-from .tools.edit_file import edit_file  # noqa: F401
-from .tools.glob import glob  # noqa: F401
-from .tools.grep import grep  # noqa: F401
-from .tools.init_project import init_project  # noqa: F401
-from .tools.ls import ls  # noqa: F401
-from .tools.mv import mv  # noqa: F401
-from .tools.read_file import read_file  # noqa: F401
-from .tools.rm import rm  # noqa: F401
-from .tools.run_command import run_command  # noqa: F401
-from .tools.think import think  # noqa: F401
-from .tools.write_file import write_file  # noqa: F401
+
+# pyright: reportUnusedImport=false
+# pylint: disable=unused-import
+# Import tools to register them with MCP - these are used indirectly
 
 
 def get_files_respecting_gitignore(dir_path: Path, pattern: str = "**/*") -> List[Path]:
@@ -44,7 +36,7 @@ def get_files_respecting_gitignore(dir_path: Path, pattern: str = "**/*") -> Lis
     all_dirs = [dir_path] + [p for p in all_paths if p.is_dir()]
 
     # Find all .gitignore files in the directory and subdirectories
-    gitignore_specs = {}
+    gitignore_specs: dict[Path, pathspec.GitIgnoreSpec] = {}
 
     # Process .gitignore files from root to leaf directories
     for directory in sorted(all_dirs, key=lambda d: str(d)):
@@ -268,13 +260,15 @@ def init_codemcp_project(path: str, python: bool = False) -> str:
     files_to_add = []
 
     # Function to replace placeholders in a string
-    def replace_placeholders(text):
+    def replace_placeholders(text: str) -> str:
         for placeholder, value in replacements.items():
             text = text.replace(placeholder, value)
         return text
 
     # Function to process a file from template directory to output directory
-    def process_file(template_file, template_root, output_root):
+    def process_file(
+        template_file: Path, template_root: Path, output_root: Path
+    ) -> Optional[Path]:
         # Get the relative path from template root
         rel_path = template_file.relative_to(template_root)
 
@@ -382,7 +376,9 @@ def init(path: str, python: bool) -> None:
 @click.argument("command", type=str)
 @click.argument("args", nargs=-1)
 @click.option("--path", type=click.Path(), default=".", help="Project directory path")
-def run(command: str, args: tuple, path: str) -> None:
+def run_command_cli(
+    command: str, args: tuple[str, ...], path: str
+) -> None:  # Renamed from run to avoid redeclaration
     """Run a command defined in codemcp.toml without doing git commits.
 
     The command should be defined in the [commands] section of codemcp.toml.
@@ -529,8 +525,9 @@ def run() -> None:
     # Set up a signal handler to exit immediately on Ctrl+C
     import os
     import signal
+    from typing import Any, NoReturn
 
-    def handle_exit(sig, frame):
+    def handle_exit(sig: int, frame: Any) -> NoReturn:
         logging.info(
             "Received shutdown signal - exiting immediately without waiting for connections"
         )
@@ -577,9 +574,10 @@ def serve(host: str, port: int, cors_origin: List[str]) -> None:
 
     import os
     import signal
+    from typing import Any, NoReturn
 
     # Register a custom signal handler that will take precedence and exit immediately
-    def handle_exit(sig, frame):
+    def handle_exit(sig: int, frame: Any) -> NoReturn:
         logging.info(
             "Received shutdown signal - exiting immediately without waiting for connections"
         )
diff --git a/codemcp/tools/init_project.py b/codemcp/tools/init_project.py
index 5a23884..74b49b7 100644
--- a/codemcp/tools/init_project.py
+++ b/codemcp/tools/init_project.py
@@ -39,7 +39,8 @@ def _slugify(text: str) -> str:
     return text[:50]
 
 
-def _generate_command_docs(command_docs: Dict[str, str]) -> str:
+# pyright: reportUnusedFunction=false
+def _generate_command_docs(command_docs: Dict[str, str]) -> str:  # noqa: F811
     """Generate documentation for commands from the command_docs dictionary.
 
     Args:
diff --git a/codemcp/tools/write_file.py b/codemcp/tools/write_file.py
index 25e6725..25665ea 100644
--- a/codemcp/tools/write_file.py
+++ b/codemcp/tools/write_file.py
@@ -3,6 +3,7 @@
 import json
 import logging
 import os
+from typing import Any
 
 from ..code_command import run_formatter_without_commit
 from ..common import normalize_file_path
@@ -24,7 +25,7 @@
 @mcp.tool()
 async def write_file(
     path: str,
-    content: str | dict | list | None = None,
+    content: str | dict[str, Any] | list[Any] | None = None,
     description: str | None = None,
     chat_id: str | None = None,
     commit_hash: str | None = None,
@@ -68,10 +69,12 @@ async def write_file(
     else:
         content_str = content or ""
 
-    # Normalize newlines
+    # Normalize newlines if content is a string
+    # content_str could be dict/list that was passed directly from the content parameter
+
     content_str = (
         content_str.replace("\r\n", "\n")
-        if isinstance(content_str, str)
+        if isinstance(content_str, str)  # pyright: ignore[reportUnnecessaryIsInstance]
         else content_str
     )