ci.yml

# This file was originally generated by maturin v0.14.17

name: CI3

on:
  push:
  schedule:
    - cron: '0 0 1 * *'
  pull_request:
  workflow_dispatch:
    
env:
  CARGO_TERM_COLOR: always

permissions:
  contents: read

jobs:

  test_rust:
    name: Test Rust
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, windows-latest, macos-13, macos-14]
    runs-on: ${{ matrix.os }}
    steps:
      - name: Checkout
        uses: actions/checkout@v3
      - name: Set up Rust
        uses: actions-rs/toolchain@v1
        with:
          toolchain: stable
          override: true
      - name: Test Rust no-default-features
        run: cargo test --verbose --no-default-features
      - name: Test Rust default features
        run: cargo test --verbose
  
  
  macos:
    runs-on: macos-13
    strategy:
      matrix:
        target: [x86_64, aarch64]
    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
        with:
          python-version: |
            3.9
            3.10
            3.11
            3.12
      - name: Build wheels
        uses: PyO3/maturin-action@v1
        with:
          target: ${{ matrix.target }}
          args: --release --out dist --find-interpreter
      - name: Upload wheels
        uses: actions/upload-artifact@v3
        with:
          name: wheels
          path: dist
          
  linux:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        target: [x86_64, aarch64]
    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
        with:
          python-version: |
            3.9
            3.10
            3.11
            3.12

      - name: Install cross-compilation dependencies
        if: matrix.target == 'aarch64'
        run: |
          sudo apt-get update
          sudo apt-get install -y gcc-aarch64-linux-gnu
          
      - name: Build wheels for aarch64
        if: matrix.target == 'aarch64'
        env:
          CC: aarch64-linux-gnu-gcc
          CFLAGS: -march=armv8-a -D__ARM_ARCH=8
        uses: PyO3/maturin-action@v1
        with:
          target: ${{ matrix.target }}
          args: --release --out dist -i python3.9 -i python3.10 -i python3.11 -i python3.12
          manylinux: auto

      - name: Build wheels for x86_64
        if: matrix.target == 'x86_64'
        uses: PyO3/maturin-action@v1
        with:
          target: ${{ matrix.target }}
          args: --release --out dist -i python3.9 -i python3.10 -i python3.11 -i python3.12
          manylinux: auto

      - name: Upload wheels
        uses: actions/upload-artifact@v3
        with:
          name: wheels
          path: dist
          
  windows:
    runs-on: windows-latest
    strategy:
      matrix:
        target: [x64]
    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
        with:
          python-version: |
            3.9
            3.10
            3.11
            3.12
          architecture: ${{ matrix.target }}
      - name: Build wheels
        uses: PyO3/maturin-action@v1
        with:
          target: ${{ matrix.target }}
          args: --release --out dist --find-interpreter
      - name: Upload wheels
        uses: actions/upload-artifact@v3
        with:
          name: wheels
          path: dist
        
  sdist:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - name: Build sdist
        uses: PyO3/maturin-action@v1
        with:
          command: sdist
          args: --out dist
      - name: Upload sdist
        uses: actions/upload-artifact@v3
        with:
          name: wheels
          path: dist

  test:
    name: Test
    strategy:
      fail-fast: false
      matrix:
        python-version: [3.9, "3.10", "3.11", "3.12"]
        os: [ubuntu-latest, windows-latest, macos-13, macos-14]
    runs-on: ${{ matrix.os }}
    steps:
    - name: Checkout
      uses: actions/checkout@v3
    - uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install flake8, etc
      run: |
        cd bed_reader
        pwd
        python -m pip install --upgrade pip
        pip install flake8 pytest black isort --upgrade
    - name: Lint with flake8, etc
      run: |
        echo "flake8"
        flake8 .
        echo "black"
        black --version
        black --verbose --check .
        echo "isort"
        isort --check-only .
    - name: Test Python - Non-Windows
      if: runner.os != 'Windows'
      run: |
        pip install virtualenv
        virtualenv vEnv; source vEnv/bin/activate
        python -m pip install --upgrade pip maturin
        maturin develop
        pip install -r requirements-min-dev.txt
        pytest bed_reader/tests/test_opt_dep.py
        echo "requirements"
        pip install -r requirements.txt
        echo "requirements-dev"
        pip install -r requirements-dev.txt
        pytest bed_reader
    - name: Test Python - Windows
      if: runner.os == 'Windows'
      run: |
        pip install virtualenv
        virtualenv vEnv; vEnv\Scripts\activate.ps1
        echo "pwd"
        pwd
        python -m pip install --upgrade pip maturin
        pip install -r requirements-min-dev.txt
        pytest bed_reader/tests/test_opt_dep.py
        echo "requirements"
        pip install -r requirements.txt
        echo "requirements-dev"
        pip install -r requirements-dev.txt
        echo "maturin"
        maturin develop
        echo "pytest"
        pytest bed_reader