From 47085a3f3b92e54d0683ec6d56d1bae79a07ca96 Mon Sep 17 00:00:00 2001
From: Carl Kadie <carlk@msn.com>
Date: Wed, 3 Jul 2024 15:54:01 -0700
Subject: [PATCH] version = "1.0.5"

---
 Cargo.lock              |  2 +-
 Cargo.toml              |  2 +-
 bed_reader/_open_bed.py |  2 --
 src/python_module.rs    | 10 +++++-----
 useful.md               |  1 -
 5 files changed, 7 insertions(+), 10 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index 410511e..ae72ee2 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -142,7 +142,7 @@ checksum = "72b3254f16251a8381aa12e40e3c4d2f0199f8c6508fbecb9d91f575e0fbb8c6"
 
 [[package]]
 name = "bed-reader"
-version = "1.0.5-beta.3"
+version = "1.0.5"
 dependencies = [
  "anyhow",
  "anyinput",
diff --git a/Cargo.toml b/Cargo.toml
index 71b16a4..19f12cf 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -1,5 +1,5 @@
 [package]
-version = "1.0.5-beta.3"
+version = "1.0.5"
 name = "bed-reader"
 description = "Read and write the PLINK BED format, simply and efficiently."
 repository = "https://github.com/fastlmm/bed-reader"
diff --git a/bed_reader/_open_bed.py b/bed_reader/_open_bed.py
index 4ab392b..383e1ab 100644
--- a/bed_reader/_open_bed.py
+++ b/bed_reader/_open_bed.py
@@ -1832,8 +1832,6 @@ def _convert_to_dtype(str_arr, dtype):
         return str_arr
 
     try:
-        if str_arr[0].startswith("np."):
-            raise ValueError("invalid cmk for int: 'np.'")
         new_arr = str_arr.astype(dtype)
     except ValueError as e:
         if dtype == np.float32:
diff --git a/src/python_module.rs b/src/python_module.rs
index f5a2e42..5533a67 100644
--- a/src/python_module.rs
+++ b/src/python_module.rs
@@ -50,7 +50,7 @@ fn bed_reader(_py: Python<'_>, m: &Bound<'_, PyModule>) -> PyResult<()> {
 
     #[pyfn(m)]
     fn url_to_bytes(location: &str, options: &Bound<'_, PyDict>) -> Result<Vec<u8>, PyErr> {
-        let options: HashMap<String, String> = options.extract()?; // cmk
+        let options: HashMap<String, String> = options.extract()?;
         let cloud_file = CloudFile::new_with_options(location, options)
             .map_err(|e| Box::new(BedErrorPlus::CloudFileError(e)))?;
         let rt = runtime::Runtime::new()?;
@@ -178,7 +178,7 @@ fn bed_reader(_py: Python<'_>, m: &Bound<'_, PyModule>) -> PyResult<()> {
 
     #[pyfn(m)]
     fn check_file_cloud(location: &str, options: &Bound<'_, PyDict>) -> Result<(), PyErr> {
-        let options: HashMap<String, String> = options.extract()?; // cmk
+        let options: HashMap<String, String> = options.extract()?;
         runtime::Runtime::new()?.block_on(async {
             BedCloud::new_with_options(location, options).await?;
             Ok(())
@@ -200,7 +200,7 @@ fn bed_reader(_py: Python<'_>, m: &Bound<'_, PyModule>) -> PyResult<()> {
         max_concurrent_requests: usize,
         max_chunk_bytes: usize,
     ) -> Result<(), PyErr> {
-        let options: HashMap<String, String> = options.extract()?; // cmk
+        let options: HashMap<String, String> = options.extract()?;
 
         let iid_index = iid_index.readonly();
         let sid_index = sid_index.readonly();
@@ -247,7 +247,7 @@ fn bed_reader(_py: Python<'_>, m: &Bound<'_, PyModule>) -> PyResult<()> {
         max_concurrent_requests: usize,
         max_chunk_bytes: usize,
     ) -> Result<(), PyErr> {
-        let options: HashMap<String, String> = options.extract()?; // cmk
+        let options: HashMap<String, String> = options.extract()?;
 
         let iid_index = iid_index.readonly();
         let sid_index = sid_index.readonly();
@@ -294,7 +294,7 @@ fn bed_reader(_py: Python<'_>, m: &Bound<'_, PyModule>) -> PyResult<()> {
         max_concurrent_requests: usize,
         max_chunk_bytes: usize,
     ) -> Result<(), PyErr> {
-        let options: HashMap<String, String> = options.extract()?; // cmk
+        let options: HashMap<String, String> = options.extract()?;
 
         let iid_index = iid_index.readonly();
         let sid_index = sid_index.readonly();
diff --git a/useful.md b/useful.md
index fbb6eec..ddc1446 100644
--- a/useful.md
+++ b/useful.md
@@ -4,7 +4,6 @@
 
 To get some Rust PyO3 debugging to work I had to set this before starting vscode:
 
-<!-- cmk -->
 ```cmd
 set PYO3_PYTHON=C:/Users/carlk/OneDrive/programs/bed-reader/.venv\Scripts\python.exe
 ```