From 940a3d787b21dfec26537a8a67c0d56a9b2ddb7f Mon Sep 17 00:00:00 2001
From: Carl Kadie <carlk@msn.com>
Date: Sat, 3 Feb 2024 15:13:59 -0800
Subject: [PATCH] ci7

---
 examples/cloud.rs    | 34 ++++++++++++++++++++++++++++++++++
 examples/no_cloud.rs | 19 +++++++++++++++++++
 2 files changed, 53 insertions(+)
 create mode 100644 examples/cloud.rs
 create mode 100644 examples/no_cloud.rs

diff --git a/examples/cloud.rs b/examples/cloud.rs
new file mode 100644
index 0000000..8c36250
--- /dev/null
+++ b/examples/cloud.rs
@@ -0,0 +1,34 @@
+#[cfg(feature = "tokio")]
+use bed_reader::{BedCloud, BedErrorPlus, ReadOptions};
+#[cfg(feature = "tokio")]
+use ndarray::s;
+#[cfg(feature = "tokio")]
+use std::collections::HashSet;
+
+#[cfg(feature = "tokio")]
+#[tokio::main]
+async fn main() -> Result<(), Box<BedErrorPlus>> {
+    let url = "https://raw.githubusercontent.com/fastlmm/bed-sample-files/main/some_missing.bed";
+    let cloud_options = [("timeout", "10s")];
+
+    let mut bed_cloud = BedCloud::new_with_options(url, cloud_options).await?;
+    println!("{:?}", bed_cloud.iid().await?.slice(s![..5])); // Outputs ndarray: ["iid_0", "iid_1", "iid_2", "iid_3", "iid_4"]
+    println!("{:?}", bed_cloud.sid().await?.slice(s![..5])); // Outputs ndarray: ["sid_0", "sid_1", "sid_2", "sid_3", "sid_4"]
+    println!(
+        "{:?}",
+        bed_cloud.chromosome().await?.iter().collect::<HashSet<_>>()
+    );
+    // Outputs: {"12", "10", "4", "8", "19", "21", "9", "15", "6", "16", "13", "7", "17", "18", "1", "22", "11", "2", "20", "3", "5", "14"}
+    let _ = ReadOptions::builder()
+        .sid_index(bed_cloud.chromosome().await?.map(|elem| elem == "5"))
+        .f64()
+        .read_cloud(&mut bed_cloud)
+        .await?;
+
+    Ok(())
+}
+
+#[cfg(not(feature = "tokio"))]
+pub fn main() {
+    println!("This example requires the 'tokio/full' feature to be enabled");
+}
diff --git a/examples/no_cloud.rs b/examples/no_cloud.rs
new file mode 100644
index 0000000..fe03b69
--- /dev/null
+++ b/examples/no_cloud.rs
@@ -0,0 +1,19 @@
+use bed_reader::{sample_bed_file, Bed, BedErrorPlus, ReadOptions};
+use ndarray::s;
+use std::collections::HashSet;
+
+fn main() -> Result<(), Box<BedErrorPlus>> {
+    let file_name = sample_bed_file("some_missing.bed")?;
+
+    let mut bed = Bed::new(file_name)?;
+    println!("{:?}", bed.iid()?.slice(s![..5])); // Outputs ndarray: ["iid_0", "iid_1", "iid_2", "iid_3", "iid_4"]
+    println!("{:?}", bed.sid()?.slice(s![..5])); // Outputs ndarray: ["sid_0", "sid_1", "sid_2", "sid_3", "sid_4"]
+    println!("{:?}", bed.chromosome()?.iter().collect::<HashSet<_>>());
+    // Outputs: {"12", "10", "4", "8", "19", "21", "9", "15", "6", "16", "13", "7", "17", "18", "1", "22", "11", "2", "20", "3", "5", "14"}
+    let _ = ReadOptions::builder()
+        .sid_index(bed.chromosome()?.map(|elem| elem == "5"))
+        .f64()
+        .read(&mut bed)?;
+
+    Ok(())
+}