azure-pipelines.yml

jobs:
- job: Default
  timeoutInMinutes: 300
  pool:
    vmImage: Ubuntu-16.04
  steps:
  - script: |
      nproc
      lscpu
    displayName: 'Machine info'
  - script: |
      sudo chown -R $USER $CONDA
      . $CONDA/etc/profile.d/conda.sh
      conda create --yes --quiet --name volcano_nmf python=3.7.3 pip
    displayName: 'Setup conda'
  - script: |
      . $CONDA/etc/profile.d/conda.sh
      conda activate volcano_nmf
      conda install -y -q numpy scipy mkl openblas=0.3.6 theano
      theano-cache purge
      pip install -U pip
      pip install -U setuptools
      pip install -U pytest
      pip install -U tqdm
      pip install -U -r requirements.txt
      pip install https://github.com/astropy/astroquery/archive/master.zip
      conda install -y -q -c conda-forge tectonic pybind11
      git clone https://github.com/rodluger/starry
      cd starry && STARRY_DEBUG=1 python setup.py develop
      cd .. && git clone https://github.com/fbartolic/volcano
      cd volcano && python setup.py develop
      cd .. && python setup.py develop
    displayName: 'Install dependencies'
  - script: |
      . $CONDA/etc/profile.d/conda.sh
      conda activate volcano_nmf
      pytest -v -s volcano_nmf
    displayName: 'Run tests'
  - script: |
      . $CONDA/etc/profile.d/conda.sh
      conda activate volcano_nmf
      cd $(Build.SourcesDirectory)/paper
      make 
    displayName: 'Build the paper'
  - script: |
      cd $(Build.SourcesDirectory)
      git checkout --orphan $(Build.SourceBranchName)-pdf
      git rm -rf --cached .
      git add -f paper/paper.pdf
      git add -f paper/figures/*.pdf
      git -c user.name='azure' -c user.email='azure' commit -m "building the paper"
      git push -q -f https://$GITHUB_USER:$GITHUB_API_KEY@github.com/fbartolic/volcano_nmf $(Build.SourceBranchName)-pdf
    displayName: 'Upload the paper'
    env:
      GITHUB_API_KEY: $(GITHUB_API_KEY)