Quickstart

#!/bin/bash

# This script is the run-able quickstart guide for building this project. It
# assumes you are running on a recent version of Ubuntu or Debian. See the
# README file if you are using a different distribution.

# install openmpi from ubuntu package manager
    sudo apt-get install -y libopenmpi-dev openmpi-bin libhdf5-openmpi-dev openmpi-common

# Add NetCDF 
# 1) We need HDF
#Required for NetCDF integration; source is supported at http://www.hdfgroup.org/ftp/HDF5/current/src

HDF_VERSION="1.10.1"  
# Download build and install HDF5
    mkdir ~/temp
    cd ~/temp
    wget http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-${HDF_VERSION}.tar.bz2; \
    tar -xjvf hdf5-${HDF_VERSION}.tar.bz2; \ 
    cd hdf5-${HDF_VERSION}; \
    ./configure --enable-shared --prefix=/usr/local/hdf5; \
    make;  \
    sudo make install; \
    cd ..;  \
    rm -rf /hdf5-${HDF_VERSION} /hdf5-${HDF_VERSION}.tar.bz2; 


# 2)
#Build netcdf 
# First we need to build NetCDF C version 
# (http://www.unidata.ucar.edu/software/netcdf/docs/getting_and_building_netcdf.html)
# Download and install netcdf C

   NCD_VERSION="4.3.3.1"
   wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-${NCD_VERSION}.tar.gz;  
   tar -xzvf netcdf-${NCD_VERSION}.tar.gz; 
   cd netcdf-${NCD_VERSION}; 
   ./configure --prefix=/usr/local/netcdf CC=gcc LDFLAGS=-L/usr/local/hdf5/lib CFLAGS=-I/usr/local/hdf5/include; 
   make ; 
   sudo make install; 
   cd .. ;
   rm -rf netcdf-${NCD_VERSION} netcdf-${NCD_VERSION}.tar.gz

# 3) Build NetCDF fortran version
# (http://www.unidata.ucar.edu/software/netcdf/docs/building_netcdf_fortran.html)
# Download and install NetCDF fortran
     NCF_VERSION="4.4.2"
     wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-${NCF_VERSION}.tar.gz; 
     tar -xzvf netcdf-fortran-${NCF_VERSION}.tar.gz;  
     cd netcdf-fortran-${NCF_VERSION}; 
    ./configure --prefix=/usr/local/netcdf  --disable-fortran-type-check CC=gcc FC=gfortran  LDFLAGS=-L/usr/local/netcdf/lib CFLAGS=-I/usr/local/netcdf/include; 
     make ;  
     sudo make install; 
     cd ..  
     rm -rf netcdf-fortran-${NCF_VERSION}  netcdf-fortran-${NCF_VERSION}.tar.gz