DESCRIPTION

Type: Package
Package: DR.SC
Title: Joint Dimension Reduction and Spatial Clustering
Version: 3.4
Date: 2024-03-19
Authors@R: 
    c(person(given = "Wei",
             family = "Liu",
             role = c("aut", "cre"),
             email = "liuweideng@gmail.com"),
      person(given = "Yi",
             family = "Yang",
             role = c("aut")),
      person(given = "Jin",
             family = "Liu",
             role = "aut"))
Author: Wei Liu [aut, cre], Yi Yang [aut],  Jin Liu [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>
Description: Joint dimension reduction and spatial clustering is conducted for
    Single-cell RNA sequencing and spatial transcriptomics data, and more details can be referred to 
    Wei Liu, Xu Liao, Yi Yang, Huazhen Lin, Joe Yeong, Xiang Zhou, Xingjie Shi and Jin Liu. (2022) <doi:10.1093/nar/gkac219>. It is not only computationally efficient and scalable to the sample size increment, but also is capable of choosing the smoothness parameter and the number of clusters as well.
License: GPL-3
Depends: 
    parallel,
    spatstat.geom,
    R (>= 4.0.0)
Imports: 
    CompQuadForm,
    irlba,
    cowplot,
    ggplot2,
    GiRaF,
    MASS,
    Matrix,
    mclust,
    methods,
    purrr,
    S4Vectors,
    RColorBrewer,
    Rcpp (>= 1.0.5),
    Seurat,
    stats
Suggests: 
    knitr,
    rmarkdown
LinkingTo: 
    Rcpp,
    RcppArmadillo
VignetteBuilder: 
    knitr
Encoding: UTF-8
NeedsCompilation: yes
RoxygenNote: 7.1.1
URL: https://github.com/feiyoung/DR.SC
BugReports: https://github.com/feiyoung/DR.SC/issues