NAMESPACE

useDynLib(DR.SC, .registration=TRUE)
importFrom(Rcpp, evalCpp)
#exportPattern("^[[:alpha:]]+")

export(DR.SC, DR.SC_fit, gendata_RNAExp,  FindSVGs, getAdj, getAdj_manual,
       getAdj_auto, RunWPCA, topSVGs, selectModel)
export(spatialPlotClusters, drscPlot, mbicPlot)
export(read10XVisium,readscRNAseq)

  
S3method("DR.SC","Seurat")
S3method("getAdj","Seurat")

S3method("selectModel","Seurat")
S3method("selectModel","drscObject")

S3method("RunWPCA","Seurat")
S3method("RunWPCA","matrix")
S3method("RunWPCA","dgCMatrix")



# importFrom(SPARK, sparkx)

import(parallel)
import(spatstat.geom)
importFrom(irlba, irlba) 
importFrom(MASS, mvrnorm)
importFrom(ggplot2, ggplot, aes, aes_string, geom_line, ylab,geom_point,
           theme,element_blank,element_text,scale_color_manual)
importFrom(CompQuadForm, davies, liu)
importFrom("methods", "as", "is")
importFrom("stats", "p.adjust", "pcauchy", "quantile", "sd", "dist")
importFrom(stats,rnorm, rmultinom, cov,cor)
importFrom("utils", "read.csv", "read.table", "setTxtProgressBar",
             "txtProgressBar")
importFrom(cowplot, theme_cowplot)
importFrom(GiRaF,sampler.mrf)
importFrom(purrr, discard, keep)
importFrom(Matrix, sparseMatrix, t)
importFrom(RColorBrewer, brewer.pal)
importFrom(mclust,Mclust, mclustBIC)
importFrom(Seurat, RidgePlot, VlnPlot, FeaturePlot, DotPlot, DoHeatmap,
           FindVariableFeatures, DefaultAssay,LogNormalize,CreateDimReducObject,
           Idents, RunTSNE,RunUMAP, DimPlot, CreateSeuratObject,ReadMtx,'Idents<-',
           AddMetaData, GetAssayData)
importFrom(S4Vectors, DataFrame)
# importFrom(doSNOW,registerDoSNOW)
# importFrom(snow, makeSOCKcluster, stopCluster)
# importFrom(foreach,foreach)
# importFrom(parallel, stopCluster, parSapply,clusterExport)