shiny::shinyApp(ui = qg::.buildQgUI , server = qg::.buildQgServer) -> qg
## Have a lot of fun!
qg
https://gitlab.bfabric.org/proteomics/shiny-ms-apps-dockerized
| container | instument | LC. | position | type | area |
|---|---|---|---|---|---|
| 36104 | ASTRAL_1 | MCLASS | 1:A,1 | vial. | P |
| 35270 | EXPLORIS_3 | VANQUISH | 1:A1 | vial. | M |
| 35117 | TIMSTOF_1 | EVOSEP | 1:A1 | plate | P |
| xxx |
anno 2010
- fgcz naming convention,
- injecting bfabric sample IDs and order IDs, ...
- automatic linking to meta data in bfabric ...
- on some point we want to have it in bfabric
- ((autoQC_user|QC)) - autoQC01, autoQC03, autoQC4; soon: ((autoQC05)), ((autoQC06)), ((autoQC07)), ((autoQC08))
- blanc/clean/wash runs
- plate, e.g., 96WP, / multiplate systems
- LC systems:
.eksigent(),.water(), ...,nanoElute(),.vanquish() - instrument control software, e.g.,
XCalibur,HyStar - (block) randomization run order / across plates
- multi order
- acquisition of a sample set multiple times (with different methods, eg. pos and neg mode)
- DIL (metabolomics)
- ...
- Legacy code
- user -> enters samples in bfabric
- qg queries bfabric sample of project
- ...
inst/extdata/instrument.csv- table instrument;area;system;lcR/config.R- general configuration, e.g., Hystar driver, insertSample FUNR/configProteomics.R- configuration for proteomicsR/configMetabolomics.R- configuration for metabolomicsR/lc-systems.R- LC systems mainly how to write the possitions
- https://fgcz-intranet.uzh.ch/tiki-index.php?page=sw.queueGenerator
- runs as virtual machine: http://fgcz-c-072.uzh.ch:4001/extractPlateId/
$ BFABRICPY_CONFIG_ENV=PRODUCTION bfabric_flask.py --port 5002