anvil-library-build.yml

name: AnVIL Library Build

on:
  workflow_call:
    inputs:
      render-type:
        required: true
        type: string
      repository:
        type: string
        required: true
    secrets:
      gh_pat:
        required: true

jobs:
  gather-anvil-repos:
    name: Gather AnVIL Repositories
    runs-on: ubuntu-latest
    container:
      image: jhudsl/course_template:main

    steps:
      - name: Checkout files
        uses: actions/checkout@v2
        with:
          fetch-depth: 0
          token: ${{ secrets.gh_pat }}

      - name: Configure git
        run: |
          git config --local user.email "itcrtrainingnetwork@gmail.com"
          git config --local user.name "jhudsl-robot"
        shell: bash

      - name: Merge if rendering preview
        if: ${{ inputs.render-type == 'preview' }}
        run: |
          branch_name='preview-${{ github.event.pull_request.number }}'
          git fetch --all
          git checkout $branch_name
          git merge -s recursive --strategy-option=theirs origin/${{ github.head_ref }} --allow-unrelated-histories
        shell: bash

      - name: Checkout if main
        if: ${{ inputs.render-type == 'main' }}
        run: |
          git fetch --all
          git checkout main
        shell: bash

      - name: Run AnVIL repo check
        id: anvil_repos
        env:
          GH_PAT: ${{ secrets.gh_pat }}
        run: |
          sudo apt-get install libcurl4-openssl-dev

          # Need a clean render of the AnVIL repos library
          rm -f resources/AnVIL_repos.tsv
          rm -f docs/index.html

          # Run repo check script
          Rscript --vanilla "scripts/anvil_repo_check.R" --git_pat "$GH_PAT"

      - name: Archive AnVIL repos
        uses: actions/upload-artifact@v2
        with:
          name: anvil-repo-results
          path: resources/AnVIL_repos.tsv

      # Commit the rendered bookdown files
      - name: Commit AnVIL Repos file to main
        if: ${{ inputs.render-type == 'main' }}
        env:
          GH_PAT: ${{ secrets.gh_pat }}
        run: |
          git add --force resources/AnVIL_repos.tsv
          git commit -m 'add AnVIL repos' || echo "No changes to commit"
          git fetch
          git merge -s recursive --strategy-option=ours origin/main --allow-unrelated-histories
          git push -u origin main || echo "No changes to push"

      - name: Commit AnVIL Repos file to preview
        if: ${{ inputs.render-type == 'preview' }}
        run: |
          branch_name='preview-${{ github.event.pull_request.number }}'
          git add --force resources/AnVIL_repos.tsv || echo "No changes to commit"
          git commit -m 'Add AnVIL repos file' || echo "No changes to commit"
          git fetch
          git merge -s recursive --strategy-option=theirs origin/${{ github.head_ref }} --allow-unrelated-histories
          git push --force origin $branch_name || echo "No changes to commit"