|
| 1 | +--- |
| 2 | +layout: home |
| 3 | +title: February 2025, Flatiron |
| 4 | +categories: workshops |
| 5 | +date: Feb 2025 |
| 6 | +redirect_from: /workshops/feb-2025/ |
| 7 | +--- |
| 8 | + |
| 9 | + |
| 10 | + |
| 11 | +# Flatiron CCN Software Workshop, February 2025 |
| 12 | + |
| 13 | +We are excited to see everyone at the Flatiron Center for Computational Neuroscience workshop on using open source packages to analyze neural data in February 2025! |
| 14 | + |
| 15 | +Over the course of this two-day workshop, we will walk you through the notebooks included on this site in order to demonstrate how to use pynapple and NeMoS to analyze and visualize your data. |
| 16 | + |
| 17 | +This website contains links to the presentations for the workshop, as well as to other useful information. |
| 18 | + |
| 19 | +## Useful links |
| 20 | + |
| 21 | +- [Workshop schedule](#schedule) |
| 22 | +- [Notebook site](https://flatironinstitute.github.io/neurorse-workshops/workshops/jan-2025/branch/main/) |
| 23 | +- Websites for the packages used in this workshop: |
| 24 | + - pynapple: [documentation](https://pynapple.org/), [github repo](https://github.com/pynapple-org/pynapple), [twitter](https://x.com/thepynapple), [bluesky](https://bsky.app/profile/pynapple.bsky.social) |
| 25 | + - NeMoS: [documentation](https://nemos.readthedocs.io/en/latest/), [github repo](https://github.com/flatironinstitute/nemos), [twitter](https://x.com/nemos_neuro) |
| 26 | + |
| 27 | +## Setup |
| 28 | + |
| 29 | +Before the workshop begins, please follow the setup instructions found on the [workshop notebook site](https://flatironinstitute.github.io/neurorse-workshops/workshops/jan-2025/branch/main/) |
| 30 | + |
| 31 | +## Presentations, in chronological order |
| 32 | + |
| 33 | +- [Intro to CCN](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/CCN-overview-softwareWorkshop-jan2025.pdf), Eero Simoncelli |
| 34 | +- [Welcome](/presentations/jan-2025/welcome), Billy Broderick ([pdf version](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/welcome.pdf)) |
| 35 | +- [Neurodata Without Borders](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/2025_01_30_CCN_Flatiron_NWB_Ruebel.pdf), Oliver Rübel |
| 36 | +- [Pynapple](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/workshop-pynapple-presentation-jan-2025.pdf), Guillaume Viejo |
| 37 | +- [Signal processing and decoding](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/hippocampus_background_jan25.pdf), Sarah Jo Venditto |
| 38 | +- [fastplotlib](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/fpl-pitch.pdf), Kushal Kolar |
| 39 | +- [A conceptual introduction to Generalized Linear Models](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/glm_intro_jan_feb_2025.pdf), Edoardo Balzani |
| 40 | +- [Basic Generalized Linear Models with NeMoS](/presentations/jan-2025/current_injection), Billy Broderick ([pdf version](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/current_injection.pdf)) |
| 41 | +- [Model Selection and Cross-Validation](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/model_selection.pdf), Edoardo Balzani |
| 42 | +- [scikit-learn and nemos](/presentations/jan-2025/scikit-learn), Billy Broderick ([pdf version](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/scikit-learn.pdf)) |
| 43 | +- [Conclusion](/presentations/jan-2025/conclusion), Billy Broderick ([pdf version](https://users.flatironinstitute.org/~wbroderick/presentations/jan-2025/conclusion.pdf)) |
| 44 | + |
| 45 | +## Schedule |
| 46 | + |
| 47 | +| Day 0 (Tues, Feb 4) | | |
| 48 | +|--------------------------|-----------------------------------------------------------------------------------------| |
| 49 | +| 1pm -- 2pm | Welcome and networking lunch | |
| 50 | +| 2pm -- 5pm | Installation help | |
| 51 | +|--------------------------|-----------------------------------------------------------------------------------------| |
| 52 | +| **Day 1 (Wed, Feb 5)** | **pynapple** | |
| 53 | +|--------------------------|-----------------------------------------------------------------------------------------| |
| 54 | +| 10 -- 11am | Welcome and introduction to data standards | |
| 55 | +| 11 -- 11:30am | Coffee break | |
| 56 | +| 11:30am -- 1pm | Pynapple core | |
| 57 | +| 1 -- 2pm | Lunch | |
| 58 | +| 2 -- 3:30pm | Standard analyses in systems neuroscience, part 1: cross-correlations and tuning curves | |
| 59 | +| 3:30 -- 4pm | Participant photo and Coffee break | |
| 60 | +| 4 -- 5:45pm | Standard analyses in systems neuroscience, part 2: signal processing | |
| 61 | +| 5:45 -- 6pm | [fastplotlib](https://github.com/fastplotlib/fastplotlib) advertisement | |
| 62 | +|--------------------------|-----------------------------------------------------------------------------------------| |
| 63 | +| **Day 2 (Thurs, Feb 6)** | **NeMoS** | |
| 64 | +|--------------------------|-----------------------------------------------------------------------------------------| |
| 65 | +| 10 -- 11am | Introduction to Generalized Linear Models (GLMs) | |
| 66 | +| 11 -- 11:30am | Coffee break | |
| 67 | +| 11:30am -- 1pm | Fitting a basic GLM to single neuron patch-clamp recordings | |
| 68 | +| 1 -- 2pm | Lunch | |
| 69 | +| 2 -- 4pm | Functional connectivity analysis of head-direction neurons | |
| 70 | +| 4 -- 4:30pm | Coffee break | |
| 71 | +| 4:30 -- 6pm | Feature selection and model comparison | |
| 72 | +| 6 -- 8pm | Concluding reception | |
| 73 | + |
| 74 | +## Speakers |
| 75 | + |
| 76 | +{% assign speakers = "balzani,broderick,venditto,viejo,ruebel" | split: "," %} |
| 77 | +{% include people_cards.html people=speakers %} |
| 78 | + |
| 79 | +## TAs |
| 80 | + |
| 81 | +{% assign speakers = "chinigo,zheng,rullan-buxo,garon,tanelus,kolar" | split: "," %} |
| 82 | +{% include people_cards.html people=speakers %} |
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