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CHANGELOG.md

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Change Log

v0.3.1 (_/03/2024)

  • API change: removed DimensionalityException
    • DimensionalityException replaced with -math.inf log probability in birth and death perturbations
  • New feature: Voronoi1D
    • Voronoi1D.compute_interface_positions() added
  • Enhancement: Voronoi1D.compute_cell_extents now deals with negative lower boundaries

v0.3.0 (15/03/2024)

  • New feature: Nested parameter space (and discretization)

v0.2.4 (07/03/2024)

  • Enhancement: __repr__ in some classes

v0.2.3 (07/03/2024)

  • New feature: bayesbay.prior.LaplacePrior
  • New feature: bayesbay.LogLikelihood.__repr__
  • New feature: bayesbay.Target.__repr__

v0.2.2 (04/03/2024)

  • New feature: Voronoi2D
    • Voronoi2D.get_tessellation_statistics() added
  • API change: Voronoi1D
    • generalized all static methods:
      • interpolate_tessellation
      • _interpolate_tessellations
      • get_tessellation_statistics
      • plot_tessellation
      • plot_tessellations
      • plot_tessellation_statistics
      • plot_tessellation_density

v0.2.1 (27/02/2024)

  • New feature: Voronoi2D
    • Voronoi2D.interpolate_tessellation() added
    • Voronoi2D.polygon added, allowing for prior probabilities defined within polygons
  • API change: bayesbay.samplers._samplers
    • multiprocessing now carried out with joblib

v0.2.0 (14/02/2024)

  • New feature:
    • Voronoi2D added
  • New feature: pertubation_weights
    • weights can be updated
      • BaseBayesianInversion.set_perturbation_funcs(funcs, weights)
      • BaseMarkovChain.set_perturbation_funcs(funcs, weights)
    • weights can be assigned during initialization
      • BaseBayesianInversion(perturbation_weights, ...)
      • BaseMarkovChain(perturbation_weights, ...)
      • MarkovChain(perturbation_weights, ...)
  • API change: bayesbay.parameters -> bayesbay.prior
    • UniformParameter -> UniformPrior
    • GaussianParameter -> GaussianPrior
    • CustomParameter -> CustomPrior
  • API change: ParameterSpaceState and State
    • cache added to ParameterSpaceState
    • save_to_cache, load_from_cache, saved_in_cache added to ParameterSpaceState
    • By default, the ParameterSpaceState.cache is carried over when calling State.copy(), i.e., it is copied to the new ParameterSpaceState
  • API change: bayesbay.discretization._voronoi
    • All methods in Voronoi1D, except for static ones, have been moved to Voronoi, which is now more general

v0.1.9 (05/02/2024)

  • API change: LogLikelihood can accept log likelihood function or log likelihood ratio function
  • API change: BayesianInversion now takes in instance of LogLikelihood, instead of a list of targets and forward functions
  • New API: LogLikelihood.add_targets() method that allows more data to join the inversion
  • New API: BayesianInversion.get_results_from_chains
  • New API: Parameter.sample method
  • Enhancement: __repr__ and __str__ for all classes
  • Fix: bug in nearest index when birth from neighbour

v0.1.1 (15/01/2024)

  • Add pyx file to Manifest.in

v0.1.0 (15/01/2024)

  • First release