Create_ForC_simplified.yaml

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
  workflow_run:
    workflows: 
      - QA_QC_checks
    types:
      - completed
  # push:
  #   paths:
  #     - 'data/**'
  #     - 'scripts/Database_manipulation/Create_ForC_simplified.R'
  #     - 'scripts/Database_manipulation/Create_ForC_simplified_metadata.R'
  #     - 'scripts/Database_manipulation/Flag_suspected_duplicate_in_ForC_simplified.R'
  # pull_request:
  #   paths:
  #     - 'data/**'
  #     - 'scripts/Database_manipulation/Create_ForC_simplified.R'
  #     - 'scripts/Database_manipulation/Create_ForC_simplified_metadata.R'
  #     - 'scripts/Database_manipulation/Flag_suspected_duplicate_in_ForC_simplified.R'

name: Create_ForC_simplified

jobs:
  Create_ForC_simplified:
    runs-on: windows-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
      - uses: actions/checkout@v2
      - uses: r-lib/actions/setup-r@v1
      - name: Install dependencies
        run: |
          install.packages(c("remotes", "rcmdcheck", "lubridate"))
          # remotes::install_deps(dependencies = TRUE)
        shell: Rscript {0}
      # - name: Check
      #   run: |
      #     options(crayon.enabled = TRUE)
      #     rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error")
      #   shell: Rscript {0}
      - name: Ignore SITES without coordinates
        id:  Ignore_SITES_without_coordinates
        run: |
          source("scripts/Database_manipulation/Separate_out_SITES_with_missing_coordinates.R")
        shell: Rscript {0}
      - name: Create ForC simplified
        id: Create_ForC_simplified
        run: |
          source("scripts/Database_manipulation/Create_ForC_simplified.R")
          source("scripts/Database_manipulation/Create_ForC_simplified_metadata.R")
          source("scripts/Database_manipulation/Flag_suspected_duplicate_in_ForC_simplified.R")
        shell: Rscript {0}   
      - name: Commit new files
        run: |
          git config --local user.email "actions@github.com"
          git config --local user.name "GitHub Actions"
          git pull
          git commit -m "Updating ForC_simplifed" ForC_simplified/ForC_simplified.csv ForC_simplified/ForC_simplified_metadata.csv
          git push