mkdocs.yml

site_name: Comorbidity4j Documentation
repo_url: https://github.com/fra82/comorbidity4j
repo_name: Comorbidity4j GitHub
theme: readthedocs
site_description: Documentation of Comorbidity4j, a Java tool to analyze comorbidities over large datasets of patients
docs_dir: rtdoc
pages:
- Home: index.md
- Overview: Walkthrough.md
- Input data:
    - Patient input file format: InputFileFormat.md
    - Processing OMOP Common Data Model datasets: InputFileFormatOMOP.md
- Configuration of comorbidity analysis:
    - Interactive upload and validation of input data: InteractiveInputDataUploadAndValidation.md
    - Diagnosis grouping and pairing: DiagnosisGroupingAndPairing.md
    - Comorbidity analysis parameters: ComorbidityAnalysisParametersConfig.md
- Executing Comorbidity4j on your pc: LocalExecution.md
- Comorbidity4web, execute comorbidity analyses on-line: OnlineExecution.md
- Comorbidity analysis results:
    - Comorbidity scores: ComorbidityScoresComputed.md
    - Comorbidity table: ComorbidityTable.md
    - Web-based interactive visualizations: InteractiveVisualizations.md
- Performance analysis: Performance.md
- Contacts and support: Contacts.md