From 39e4f376f86545a147a56d7f03d41832d93c0bba Mon Sep 17 00:00:00 2001 From: Sonia Zorba Date: Thu, 8 Jan 2026 10:37:05 +0100 Subject: [PATCH 1/5] Used BioNGFF/vizarr instead of fractal-analytics-platform/vizarr --- .github/workflows/github_release.yaml | 4 ++-- CHANGELOG.md | 4 ++++ Dockerfile | 4 ++-- README.md | 6 ++++-- 4 files changed, 12 insertions(+), 6 deletions(-) diff --git a/.github/workflows/github_release.yaml b/.github/workflows/github_release.yaml index f10376a..9986571 100644 --- a/.github/workflows/github_release.yaml +++ b/.github/workflows/github_release.yaml @@ -24,12 +24,12 @@ jobs: cache: npm - name: Clone vizarr - run: git clone https://github.com/fractal-analytics-platform/vizarr.git + run: git clone https://github.com/BioNGFF/vizarr - name: Checkout vizarr commit run: | cd vizarr - git checkout a04555b6557a42f4ee627850bad4e6b3fe8c8fe1 + git checkout 88b6f8128799cd946e93d46278d31a58e392bd62 - name: Install dependencies run: | diff --git a/CHANGELOG.md b/CHANGELOG.md index 44369c7..331df43 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,9 @@ Note: Numbers like (#123) point to closed Pull Requests on the fractal-vizarr-viewer repository. +# Unreleased + +* Used BioNGFF/vizarr instead of fractal-analytics-platform/vizarr (\#81); + # 0.4.3 * Update `User` type (\#74); diff --git a/Dockerfile b/Dockerfile index 30c277f..49bbfd7 100644 --- a/Dockerfile +++ b/Dockerfile @@ -2,10 +2,10 @@ FROM node:20 WORKDIR / -RUN git clone https://github.com/hms-dbmi/vizarr.git +RUN git clone https://github.com/BioNGFF/vizarr WORKDIR /vizarr -RUN git checkout eb2b77fed92a08c78c5770144bc7ccf19e9c7658 +RUN git checkout 88b6f8128799cd946e93d46278d31a58e392bd62 RUN npx -y pnpm install RUN npx pnpm run build diff --git a/README.md b/README.md index 5347e20..ab1b99e 100644 --- a/README.md +++ b/README.md @@ -40,6 +40,8 @@ If we need to serve these services on different domains a different authenticati ## Install fractal-data from release packages +> This is the suggested way to install fractal-data. + The release packages include the Node.js server and the Vizarr static files. Starting from version 0.1.3, fractal-data releases provide tar.gz files containing built Vizarr static files and a package of built files for each supported node version. ### Install Vizarr static files @@ -194,9 +196,9 @@ In order to display a proper error message related to the missing authorization > Note: for simplicity, we assume that `fractal-data` and `vizarr` are subfolders of the same folder: ```bash -git clone https://github.com/hms-dbmi/vizarr.git +git clone https://github.com/BioNGFF/vizarr cd vizarr -git checkout eb2b77fed92a08c78c5770144bc7ccf19e9c7658 +git checkout 88b6f8128799cd946e93d46278d31a58e392bd62 npx pnpm install npx pnpm run build ``` From 8657407c870a4238280c55cb81b11a59c6d5cb01 Mon Sep 17 00:00:00 2001 From: Sonia Zorba Date: Thu, 8 Jan 2026 10:40:29 +0100 Subject: [PATCH 2/5] npm audit fix --- package-lock.json | 396 ++++++++++++++++++++++++++++++---------------- 1 file changed, 259 insertions(+), 137 deletions(-) diff --git a/package-lock.json b/package-lock.json index 434a1a4..51d7c28 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1508,30 +1508,61 @@ "dev": true }, "node_modules/body-parser": { - "version": "1.20.3", - "resolved": "https://registry.npmjs.org/body-parser/-/body-parser-1.20.3.tgz", - "integrity": "sha512-7rAxByjUMqQ3/bHJy7D6OGXvx/MMc4IqBn/X0fcM1QUcAItpZrBEYhWGem+tzXH90c+G01ypMcYJBO9Y30203g==", + "version": "1.20.4", + "resolved": "https://registry.npmjs.org/body-parser/-/body-parser-1.20.4.tgz", + "integrity": "sha512-ZTgYYLMOXY9qKU/57FAo8F+HA2dGX7bqGc71txDRC1rS4frdFI5R7NhluHxH6M0YItAP0sHB4uqAOcYKxO6uGA==", "inBundle": true, "license": "MIT", "dependencies": { - "bytes": "3.1.2", + "bytes": "~3.1.2", "content-type": "~1.0.5", "debug": "2.6.9", "depd": "2.0.0", - "destroy": "1.2.0", - "http-errors": "2.0.0", - "iconv-lite": "0.4.24", - "on-finished": "2.4.1", - "qs": "6.13.0", - "raw-body": "2.5.2", + "destroy": "~1.2.0", + "http-errors": "~2.0.1", + "iconv-lite": "~0.4.24", + "on-finished": 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