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FCSplankton

FCSplankton git repository contains R scripts and Jupyter notebooks for analyzing and visualizing phytoplankton population from discrete flow cytometry data. The script allows you to visualize cytometry data, gate population of interest, save gating parameters, and perform aggregate statistics. The FCSplankton repo also includes a data curation pipeline formatted to produce an excel spreadsheet that meets the standards for data submission into Simons Collaborative Marine Atlas Project (CMAP), an open-source data portal of oceanographic datasets.

FCSplankton requires R version 3.4.0 or newer.

Tutorials:

1. Installation

2. Analysis

3. Generate Particle Size Distribution

4. Curation