Home

FCSplankton

FCSplankton git repository contains R scripts for analyzing and curating phytoplankton population from discrete flow cytometry data. The script allows you to visualize cytometry data, gate population of interest, save gating parameters, and perform aggregate statistics. The FCSplankton repo also includes a data curation pipeline formatted to produce particle size distributions and an excel spreadsheet that meets the standards for data submission into Simons Collaborative Marine Atlas Project (CMAP), an open-source data portal of oceanographic datasets.

FCSplankton requires R version 3.4.0 or newer.

Tutorials:

1. Installation

2. Analysis

3. Generate Particle Size Distribution

4. Curation