gen_mask.py

# -*- coding: utf-8 -*-
import cv2
import os
import numpy as np
import math
import shutil
import threading
import multiprocessing
from time import sleep
from PIL import Image, ImageOps, ImageChops, ImageDraw, ImageFont

import model
import unet_proc

import settings


class Gen_mask:
    # Not all cropped images will be divided to mosaic
    # Only when images which width > 640 * 1.5
    #     settings.DETECTION_CROP_IMAGE_BOX_SIZE (640)
    #     settings.RATIO_FOR_MOSAIC (1.5)
    def convert_cropped_image_folder_to_mosaic_for_big_files(self, file_dir, save_dir):
        print("\nConverting the detected meteor images to mosaic if they are big ...")

        included_extensions = ['jpg', 'JPG', 'jpeg', 'JPEG', 'bmp', 'BMP', 'png', 'PNG', 'tif', 'TIF', 'tiff', 'TIFF']
        image_list = [fn for fn in os.listdir(file_dir)
                      if any(fn.endswith(ext) for ext in included_extensions)]

        if not os.path.exists(save_dir):
            os.mkdir(save_dir)

        target_width = settings.DETECTION_CROP_IMAGE_BOX_SIZE

        for image_file in image_list:
            filename_w_path = os.path.join(file_dir, image_file)
            filename_no_ext, file_ext = os.path.splitext(image_file)

            # original_img = cv2.imread(filename_w_path)
            original_img = cv2.imdecode(np.fromfile(filename_w_path, dtype=np.uint8), -1)

            orig_height = original_img.shape[0]
            orig_width = original_img.shape[1]

            # Normally this is >= 640 * 1.5
            if orig_width >= target_width * settings.RATIO_FOR_MOSAIC:
                # Big image, let's do mosaic
                #
                #    num_X ->
                #   -------------------
                #   |   |   |   |   | |
                #   |   |   |   |   | | num_Y |
                #   -------------------       V
                #   |   |   |   |   | |
                #   |   |   |   |   | |
                #   -------------------
                #   |   |   |   |   | |
                #   -------------------

                # round up, like 3.2 => 4

                # num_X = math.ceil(orig_width / target_width)
                # num_Y = math.ceil(orig_height / target_width)

                num_X_no_overlap = orig_width / target_width
                num_Y_no_overlap = orig_height / target_width

                overlap_ratio = settings.MOSAIC_OVERLAP_RATIO

                num_X_w_overlap = math.ceil((num_X_no_overlap - overlap_ratio) / (1 - overlap_ratio))
                num_Y_w_overlap = math.ceil((num_Y_no_overlap - overlap_ratio) / (1 - overlap_ratio))

                # for i in range(num_Y):
                for i in range(num_Y_w_overlap):
                    y1 = int(target_width * (i - overlap_ratio * i))
                    y2 = y1 + target_width

                    if y2 >= orig_height:
                        # y2 = orig_height - 1
                        y2 = orig_height - 1
                        y1 = orig_height - target_width

                    for j in range(num_X_w_overlap):
                        x1 = int(target_width * (j - overlap_ratio * j))
                        x2 = x1 + target_width

                        if x2 >= orig_width:
                            # x2 = orig_width - 1
                            x2 = orig_width
                            x1 = orig_width - target_width

                        mosaic_img = original_img[y1:y2, x1:x2]
                        file_to_save = filename_no_ext + \
                                       "_mosaic_({:03d},{:03d})_({:03d},{:03d})". \
                                           format(num_Y_w_overlap, num_X_w_overlap, i + 1, j + 1) + \
                                       file_ext

                        file_to_save = os.path.join(save_dir, file_to_save)
                        # cv2.imwrite(file_to_save, mosaic_img)
                        cv2.imencode(file_ext, mosaic_img)[1].tofile(file_to_save)

            else:
                # No need to do mosaic
                # Just save the original image to the mosaic folder
                file_to_save = os.path.join(save_dir, image_file)
                # cv2.imwrite(file_to_save, original_img)
                cv2.imencode(file_ext, original_img)[1].tofile(file_to_save)

            # sleep(0.02)
        # End for-loop

    def __convert_image_to_gray_256(self, original_img):
        # img = Image.open(file_to_open).convert('L')

        # img = color.rgb2gray(io.imread(file_to_open))

        # img = original_img.convert('L')

        gray = cv2.cvtColor(original_img, cv2.COLOR_BGR2GRAY)

        basewidth = settings.UNET_IMAGE_SIZE

        # width_percent = (basewidth / float(img.size[0]))
        width_percent = (basewidth / gray.shape[0])
        height = int((float(gray.shape[1]) * float(width_percent)))

        # img = img.resize((basewidth, heigh), PIL.Image.ANTIALIAS)
        gray_256 = cv2.resize(gray, (basewidth, height))

        return gray_256

    # The orig_filename doesn't have path info. Just pure file name
    def __convert_image_file_to_gray_256(self, file_dir, orig_filename, save_dir):
        filename_w_path = os.path.join(file_dir, orig_filename)
        filename_no_ext, file_ext = os.path.splitext(orig_filename)

        # img = cv2.imread(filename_w_path)
        img = cv2.imdecode(np.fromfile(filename_w_path, dtype=np.uint8), -1)

        gray_256 = self.__convert_image_to_gray_256(img)

        file_gray_256 = filename_no_ext + "_gray_256" + file_ext
        file_gray_256 = os.path.join(save_dir, file_gray_256)

        # cv2.imwrite(file_gray_256, gray_256)
        cv2.imencode(file_ext, gray_256)[1].tofile(file_gray_256)

    def convert_image_folder_to_gray_256(self, file_dir, save_dir):
        print("\nConverting the detected meteor images to gray 256x256 size ...")

        included_extensions = ['jpg', 'JPG', 'jpeg', 'JPEG', 'bmp', 'BMP', 'png', 'PNG', 'tif', 'TIF', 'tiff', 'TIFF']
        image_list = [fn for fn in os.listdir(file_dir)
                      if any(fn.endswith(ext) for ext in included_extensions)]

        if not os.path.exists(save_dir):
            os.mkdir(save_dir)

        for image_file in image_list:
            self.__convert_image_file_to_gray_256(file_dir, image_file, save_dir)
            # sleep(0.2)

    # image_folder is the folder contains processed image, 256x256, gray
    def gen_meteor_mask_from_folder(self, image_folder, output_folder):
        print("\nGenerating mask from Unet ...")

        if not os.path.exists(output_folder):
            os.mkdir(output_folder)

        # The image size supported is (256, 256)
        unet_model = model.unet(input_size=(settings.UNET_IMAGE_SIZE, settings.UNET_IMAGE_SIZE, 1))
        unet_model.load_weights(settings.UNET_SAVED_MODEL)

        test_image_list = os.listdir(image_folder)
        num_image = len(test_image_list)

        testGene = unet_proc.testGenerator(image_folder, as_gray=True)

        '''
        test_datagen = ImageDataGenerator(rescale=1. / 255)

        batch_size = 1

        # test_folder = os.path.dirname(image_folder)
        test_generator = test_datagen.flow_from_directory(
            image_folder,
            target_size=(256, 256),
            batch_size=batch_size,
            color_mode='grayscale',
            shuffle=False,
            class_mode=None)
        '''

        results = unet_model.predict_generator(testGene, num_image, verbose=1)
        # results = unet_model.predict_generator(test_generator, num_image, verbose=1)

        unet_proc.saveResult_V2(output_folder, results, test_image_list)

    # The filename parm doesn't have path info, just pure file name
    # The file name would be like this:
    #     ER4A3109_size_(05437,03625)_0001_pos_(02194,02421)_(02834,03061).JPG
    #
    # The pos (x1, y1) (x2, y2) are the position from original image
    # Need to get this info back
    #
    def get_image_pos_from_file_name(self, filename):
        string_to_match = '_pos_('
        str_pos = filename.find(string_to_match)

        if str_pos == -1:
            return 0, 0, 0, 0

        str_x1 = filename[str_pos + 6:str_pos + 11]
        str_y1 = filename[str_pos + 12:str_pos + 17]

        str_x2 = filename[str_pos + 20:str_pos + 25]
        str_y2 = filename[str_pos + 26:str_pos + 31]

        x1 = int(str_x1)
        y1 = int(str_y1)
        x2 = int(str_x2)
        y2 = int(str_y2)

        return x1, y1, x2, y2

    # The filename parm doesn't have path info, just pure file name
    # The file name would be like this:
    #     ER4A3109_size_(05437,03625)_0001_pos_(02194,02421)_(02834,03061).JPG
    #
    # The (x1, y1) (x2, y2) are the position from original image
    # Need to get this info back
    #
    def get_image_size_from_file_name(self, filename):
        string_to_match = '_size_('
        str_pos = filename.find(string_to_match)

        if str_pos == -1:
            return 0, 0

        str_x = filename[str_pos + 7:str_pos + 12]
        str_y = filename[str_pos + 13:str_pos + 18]

        x = int(str_x)
        y = int(str_y)

        return x, y

    # This is to resize the 256x256 mask file back to its
    # original cropped XXX x XXX size. Still a small image
    # Not the original photo file size
    def resize_mask_to_original_cropped_size(self, file_dir, save_dir):
        print("\nResizing the mask back to original cropped size ...")

        included_extensions = ['jpg', 'JPG', 'jpeg', 'JPEG', 'bmp', 'BMP', 'png', 'PNG', 'tif', 'TIF', 'tiff', 'TIFF']
        image_list = [fn for fn in os.listdir(file_dir)
                      if any(fn.endswith(ext) for ext in included_extensions)]

        if not os.path.exists(save_dir):
            os.mkdir(save_dir)

        for image_file in image_list:
            filename_w_path = os.path.join(file_dir, image_file)
            filename_no_ext, file_ext = os.path.splitext(image_file)

            # The file name would be like this:
            #     ER4A3035_0003_pos_(01653,02734)_(02293,03374)_gray_256_mask.JPG
            # The (x1, y1) (x2, y2) are the position from original image
            # Need to get this info back
            #
            # If the file comes from a mosaic, it would be like this:
            # IMG_3119_size_(05472,03648)_0001_pos_(02650,01938)_(03700,02988)_mosaic_(002,002)_(001,001)_gray_256_mask_1050.png
            # Normally it needs to be re-sized back to settings.DETECTION_CROP_IMAGE_BOX_SIZE (640)
            string_to_match = '_mosaic_('
            str_pos_mosaic = image_file.find(string_to_match)

            if str_pos_mosaic == -1:
                # Normal file, read the original position info to
                # determine the size

                x1, y1, x2, y2 = self.get_image_pos_from_file_name(image_file)

                # img = cv2.imread(filename_w_path)

                # The small mask file (in 256x256) is in 8-bit format
                # Need to covert the image to 24-bit format
                img = cv2.imdecode(np.fromfile(filename_w_path, dtype=np.uint8), cv2.IMREAD_COLOR)

                # original_width = settings.detection_crop_img_box_size
                original_width = abs(x2 - x1)

                # width_percent = (basewidth / float(img.size[0]))
                width_percent = (original_width / img.shape[0])
                height = int((float(img.shape[1]) * float(width_percent)))
            else:
                # Mosaic image, the original size should be
                # settings.DETECTION_CROP_IMAGE_BOX_SIZE (normally it is 640)
                original_width = settings.DETECTION_CROP_IMAGE_BOX_SIZE
                height = settings.DETECTION_CROP_IMAGE_BOX_SIZE
                # img = cv2.imread(filename_w_path)
                img = cv2.imdecode(np.fromfile(filename_w_path, dtype=np.uint8), cv2.IMREAD_COLOR)

            resized_img = cv2.resize(img, (original_width, height))

            # Still in 8-bit gray format
            #
            # 2020-3-14:
            # NO. This will be used for extracted the meteor object directly
            # Keep it as 24-bit. Don't covert it to 8-bit
            # resized_img = cv2.cvtColor(resized_img, cv2.COLOR_BGR2GRAY)

            file_to_save = filename_no_ext + "_{}".format(original_width) + file_ext
            file_to_save = os.path.join(save_dir, file_to_save)

            # cv2.imwrite(file_to_save, resized_img)
            cv2.imencode(file_ext, resized_img)[1].tofile(file_to_save)
            # sleep(0.02)

    # After the masks are generated, and re-sized back (normally 640x640),
    # scan the ones from mosaic, and merge them back to one file
    # For images don't belong to mosaic, just save them to the new folder
    def mosaic_mask_files_merge_back(self, file_dir, save_dir):
        print("\nMerging the mosaic images back to one file ...")

        included_extensions = ['jpg', 'JPG', 'jpeg', 'JPEG', 'bmp', 'BMP', 'png', 'PNG', 'tif', 'TIF', 'tiff', 'TIFF']
        image_list = [fn for fn in os.listdir(file_dir)
                      if any(fn.endswith(ext) for ext in included_extensions)]

        if not os.path.exists(save_dir):
            os.mkdir(save_dir)

        # Need to be sorted in Ascending order by the file name
        image_list.sort()

        image_list_iter = iter(enumerate(image_list))

        for index, image_file in image_list_iter:
            # The file name would be like this:
            # IMG_3119_size_(05472,03648)_0001_pos_(02650,01938)_(03700,02988)_mosaic_(002,002)_(001,001)_gray_256_mask_1050.png
            string_to_match = '_mosaic_('
            str_pos_mosaic = image_file.find(string_to_match)

            if str_pos_mosaic > -1:
                # Ok this file should be the first one
                # of a group of mosaic images

                # To determine the original mosaic size,
                # need to get he position info
                string_to_match = '_pos_('
                str_pos = image_file.find(string_to_match)

                if str_pos == -1:
                    continue

                '''
                str_x1 = image_file[str_pos + 6:str_pos + 11]
                str_y1 = image_file[str_pos + 12:str_pos + 17]

                str_x2 = image_file[str_pos + 20:str_pos + 25]
                str_y2 = image_file[str_pos + 26:str_pos + 31]

                x1 = int(str_x1)
                y1 = int(str_y1)
                x2 = int(str_x2)
                y2 = int(str_y2)
                '''

                x1, y1, x2, y2 = self.get_image_pos_from_file_name(image_file)

                # Normally these two values should be the same
                orig_width = abs(x2 - x1)
                orig_height = abs(y2 - y1)

                # Get the X/Y number of pictures
                str_y = image_file[str_pos_mosaic + 9:str_pos_mosaic + 12]
                str_x = image_file[str_pos_mosaic + 13:str_pos_mosaic + 16]

                x = int(str_x)
                y = int(str_y)

                # num_of_pics_for_mosaic = x * y

                # Including the current image, totally num_of_pics_for_mosaic
                # should be merged
                # index range == i, i+1, i+2 ... i+num-1

                # file_to_read = image_file
                # file_to_read = os.path.join(image_dir, file_to_read)
                # img_mosaic = cv2.imread(file_to_read)
                # img_mosaic = None

                img_mosaic = Image.new('RGB', (orig_width, orig_height))

                overlap_ratio = settings.MOSAIC_OVERLAP_RATIO

                icount = 0
                for i in range(y):
                    # y_paste_from =
                    for j in range(x):
                        file_to_read = image_list[index + icount]
                        file_to_read = os.path.join(file_dir, file_to_read)
                        # img = cv2.imread(file_to_read)
                        img = Image.open(file_to_read)

                        # actually this should be the same
                        img_width = img.width

                        y_paste_from = int(img_width * (i - overlap_ratio * i))
                        if (y_paste_from + img_width) >= orig_height:
                            y_paste_from = orig_height - img_width

                        x_paste_from = int(img_width * (j - overlap_ratio * j))
                        if (x_paste_from + img_width) >= orig_width:
                            x_paste_from = orig_width - img_width

                        # To ensure the generated mask (RGB(255,255,255)) part is not overridden,
                        # do a logical_or operation with the existing part
                        mask = img_mosaic.crop((x_paste_from,
                                                y_paste_from,
                                                x_paste_from + img_width,
                                                y_paste_from + img_width)).convert("1")
                        img = ImageChops.logical_or(img.convert("1"), mask)

                        img_mosaic.paste(img, (x_paste_from, y_paste_from))
                        icount += 1

                # The file name would be like this:
                # From:
                # IMG_3119_size_(05472,03648)_0001_pos_(02650,01938)_(03700,02988)_mosaic_(002,002)_(001,001)_gray_256_mask_1050.png
                # To:
                # IMG_3119_size_(05472,03648)_0001_pos_(02650,01938)_(03700,02988)_gray_256_mask_1050.png
                #
                file_to_save = image_file[0: str_pos_mosaic] + image_file[str_pos_mosaic + 27: len(image_file)]
                # file_to_save = image_file[0: str_pos_mosaic] + "_gray_mask"
                file_to_save = os.path.join(save_dir, file_to_save)
                img_mosaic.save(file_to_save, 'PNG')

                # Done for this mosaic
                # Need to skip (x*y-1) items
                for i in range(x * y - 1):
                    next(image_list_iter)

            else: # if str_pos_mosaic > -1:
                # It should be a normal image
                # save it to the new folder
                orig_file = image_file
                orig_file = os.path.join(file_dir, orig_file)
                file_to_save = image_file
                file_to_save = os.path.join(save_dir, file_to_save)
                shutil.copyfile(orig_file, file_to_save)
            # sleep(0.02)
        # end of for-loop

    def extract_meteor_from_cropped_file_with_mask(self, cropped_photo_file, mask_file, save_file):
        cropped_img = Image.open(cropped_photo_file)

        # Need to be processed in color
        # The mask image has been changed to 24-bit
        # photo_img = ImageOps.grayscale(photo_img)

        mask_img = Image.open(mask_file)

        img_extract = ImageChops.multiply(cropped_img, mask_img)
        img_extract = img_extract.convert("RGBA")
        datas = img_extract.getdata()

        newData = []
        rgb_threshold = settings.EXTRACT_RGB_VALUE_THRESHOLD
        for item in datas:
            # if item[0] == 0 and item[1] == 0 and item[2] == 0:

            # This still needs adjustment
            # To remove some quite dark edge around the meteor
            #
            # Looks like currently 72 could be a reasonable
            # threshold
            #
            # if item[0] < 8 and item[1] < 8 and item[2] < 8:
            # if item[0] < 30 and item[1] < 30 and item[2] < 30:
            # if item[0] < 80 and item[1] < 80 and item[2] < 80:
            #
            # if item[0] < 72 and item[1] < 72 and item[2] < 72:
            # if item[0] < 30 and item[1] < 30 and item[2] < 30:
            if item[0] < rgb_threshold and item[1] < rgb_threshold and item[2] < rgb_threshold:
                newData.append((255, 255, 255, 0))
            else:
                newData.append(item)

        img_extract.putdata(newData)

        # To be in PNG format
        # file_to_save = mask_filename_no_ext + '_transparent.png'
        # file_to_save = os.path.join(save_dir, file_to_save)
        img_extract.save(save_file, "PNG")

    # def extract_meteor_from_cropped_folder_with_mask(self, photo_dir, mask_dir, save_dir):
    # crop_dir: The cropped meteor objects photo folder. Normally it is the "2_extraction"
    # mask_dir : The folder contains mask files which have been extended back
    #            to original photo size
    def extract_meteor_from_cropped_folder_with_mask(self, cropped_dir, mask_dir, save_dir, verbose):
        print("\nExtrating the meteor from cropped files...")
        included_extensions = ['jpg', 'JPG', 'jpeg', 'JPEG', 'bmp', 'BMP', 'png', 'PNG', 'tif', 'TIF', 'tiff', 'TIFF']

        if not os.path.exists(save_dir):
            os.mkdir(save_dir)

        mask_list = [fn for fn in os.listdir(mask_dir)
                     if any(fn.endswith(ext) for ext in included_extensions)]

        cropped_list = [fn for fn in os.listdir(cropped_dir)
                        if any(fn.endswith(ext) for ext in included_extensions)]

        cropped_list_no_ext = [os.path.splitext(fn)[0] for fn in cropped_list]

        for mask_file in mask_list:
            mask_filename_no_ext, file_ext = os.path.splitext(mask_file)

            # To be in PNG format
            file_to_save = mask_filename_no_ext + '_transparent.png'
            file_to_save = os.path.join(save_dir, file_to_save)

            # Look for the corresponding original photo file
            # The mask file name and the cropped image file name would be like these:
            #     IMG_3077_size_(05472,03648)_0001_pos_(01567,00746)_(02207,01386)_gray_256_mask_640.png
            #     IMG_3077_size_(05472,03648)_0001_pos_(01567,00746)_(02207,01386).JPG
            # Need to match with the first sub-string before the "_gray_256_mask_"
            # key word
            #
            # NO NO NO, no need to match the ext now. We'll use .png for those mask

            string_to_match = '_gray_256_mask_'
            str_pos = mask_filename_no_ext.find(string_to_match)

            if str_pos > -1:
                cropped_file_name_no_ext = mask_filename_no_ext[0:str_pos]
                # photo_file_name += file_ext

                # if photo_file_name in photo_list:
                if cropped_file_name_no_ext in cropped_list_no_ext:
                    list_index = cropped_list_no_ext.index(cropped_file_name_no_ext)

                    # Seems no problem if the same file name with
                    # different ext in the photo folder...
                    cropped_file_name = cropped_list[list_index]

                    cropped_file_to_read = os.path.join(cropped_dir, cropped_file_name)
                    mask_file_to_read = os.path.join(mask_dir, mask_file)

                    if verbose:
                        print("... Extracting mask {} from cropped photo {} ...".format(mask_file, cropped_file_name))

                    self.extract_meteor_from_cropped_file_with_mask(cropped_file_to_read,
                                                                    mask_file_to_read,
                                                                    file_to_save)
        # end for loop of the mask_list

    def extract_meteor_from_original_file_with_mask(self, original_photo_file, mask_file, save_file):
        original_img = Image.open(original_photo_file)

        # Need to get the position info from the mask file name
        x1, y1, x2, y2 = self.get_image_pos_from_file_name(mask_file)
        # cropped_img = original_img[y1:y2, x1:x2]
        cropped_img = original_img.crop((x1, y1, x2, y2))

        # Need to be processed in color
        # The mask image has been changed to 24-bit
        # photo_img = ImageOps.grayscale(photo_img)

        mask_img = Image.open(mask_file)

        img_extract = ImageChops.multiply(cropped_img, mask_img)
        img_extract = img_extract.convert("RGBA")
        datas = img_extract.getdata()

        newData = []
        rgb_threshold = settings.EXTRACT_RGB_VALUE_THRESHOLD
        for item in datas:
            if item[0] < rgb_threshold and item[1] < rgb_threshold and item[2] < rgb_threshold:
                newData.append((255, 255, 255, 0))
            else:
                newData.append(item)

        img_extract.putdata(newData)

        # To be in PNG format
        # file_to_save = mask_filename_no_ext + '_transparent.png'
        # file_to_save = os.path.join(save_dir, file_to_save)
        img_extract.save(save_file, "PNG")

    # We may allow some process on the cropped image, like improving the contrast to make it better
    # to be process by the UNET network.
    # In that case when doing the final extraction, we'd better to extract the meteor object from
    # the original images.
    def extract_meteor_from_original_folder_with_mask(self, original_dir, mask_dir, save_dir, verbose):
        print("\nExtrating the meteor from cropped files...")
        included_extensions = ['jpg', 'JPG', 'jpeg', 'JPEG', 'bmp', 'BMP', 'png', 'PNG', 'tif', 'TIF', 'tiff', 'TIFF']

        if not os.path.exists(save_dir):
            os.mkdir(save_dir)

        mask_list = [fn for fn in os.listdir(mask_dir)
                     if any(fn.endswith(ext) for ext in included_extensions)]

        original_list = [fn for fn in os.listdir(original_dir)
                        if any(fn.endswith(ext) for ext in included_extensions)]

        original_list_no_ext = [os.path.splitext(fn)[0] for fn in original_list]

        for mask_file in mask_list:
            mask_filename_no_ext, file_ext = os.path.splitext(mask_file)

            # To be in PNG format
            file_to_save = mask_filename_no_ext + '_transparent.png'
            file_to_save = os.path.join(save_dir, file_to_save)

            # Look for the corresponding original photo file
            # The mask file name and the original image file name would be like these:
            #     IMG_3077_size_(05472,03648)_0001_pos_(01567,00746)_(02207,01386)_gray_256_mask_640.png
            #     IMG_3077_size_(05472,03648)_0001_pos_(01567,00746)_(02207,01386).JPG
            # Need to match with the first sub-string before the "_size_("
            # key word
            #
            # NO NO NO, no need to match the ext now. We'll use .png for those mask

            string_to_match = '_size_('
            str_pos = mask_filename_no_ext.find(string_to_match)

            if str_pos > -1:
                original_file_name_no_ext = mask_filename_no_ext[0:str_pos]
                # photo_file_name += file_ext

                # if photo_file_name in photo_list:
                if original_file_name_no_ext in original_list_no_ext:
                    list_index = original_list_no_ext.index(original_file_name_no_ext)

                    # Seems no problem if the same file name with
                    # different ext in the photo folder...
                    original_file_name = original_list[list_index]

                    original_file_to_read = os.path.join(original_dir, original_file_name)
                    mask_file_to_read = os.path.join(mask_dir, mask_file)

                    if verbose:
                        print("... Extracting mask {} from original photo {} ...".format(mask_file, original_file_name))

                    self.extract_meteor_from_original_file_with_mask(original_file_to_read,
                                                                     mask_file_to_read,
                                                                     file_to_save)
            # sleep(0.02)
        # end for loop of the mask_list

    # This extends the XXX x XXX extracted meteor objects png file to the original big
    # photo file size. Still in png format
    #
    # The file name is like this:
    #     IMG_3039_size_(05472,03648)_0006_pos_(02264,00000)_(02904,00640)_gray_256_mask_640_transparent.png
    #
    # This process is a little bit slow. Better to make it multi-threaded
    # -- This is implemented by calling the
    #        extend_extracted_objects_to_original_photo_size_by_multi_threading
    #    function
    # When using multi-thread mode, the "selected_image_list" parameter is to
    # be used. It specify a sub-set of the image list to be handled by a thread.
    def extend_extracted_objects_to_original_photo_size(self, file_dir, save_dir, label_save_dir,
                                                        selected_image_list=[], verbose=1):
        if len(selected_image_list) == 0:
            print("\nExtending the extracted objects back to original photo size ...")
            # No file list specified
            # Get all image file list in the folder
            included_extensions = ['jpg', 'JPG', 'jpeg', 'JPEG', 'bmp', 'BMP', 'png', 'PNG', 'tif', 'TIF', 'tiff',
                                   'TIFF']

            image_list = [fn for fn in os.listdir(file_dir)
                          if any(fn.endswith(ext) for ext in included_extensions)]
        else:
            image_list = selected_image_list

        try:
            ttFont = ImageFont.truetype("arial.ttf", 16)
        except Exception:
            ttFont = ImageFont.load_default()

        for image_file in image_list:
            if verbose:
                print("... Processing {} ...".format(image_file))
            filename_w_path = os.path.join(file_dir, image_file)
            filename_no_ext, file_ext = os.path.splitext(image_file)

            # The file name would be like this:
            #     ER4A3109_size_(05437,03625)_0001_pos_(02194,02421)_(02834,03061).JPG
            # The size (x, y) is the original photo size
            # The pos (x1, y1) (x2, y2) are the position from original image
            # Need to get these info back
            x1, y1, x2, y2 = self.get_image_pos_from_file_name(image_file)
            target_width, target_height = self.get_image_size_from_file_name(image_file)

            # To load a PNG image with 4 channels in OpenCV,
            # use im = cv2.imread(file, cv2.IMREAD_UNCHANGED).
            # You will obtain a BGRA image.
            # img = cv2.imread(filename_w_path)

            # img = cv2.imread(filename_w_path, cv2.IMREAD_UNCHANGED)
            # cv2.IMREAD_UNCHANGED = -1
            img = cv2.imdecode(np.fromfile(filename_w_path, dtype=np.uint8), -1)

            left_extend = x1
            top_extend = y1
            bottom_extend = target_height - y2
            right_extend = target_width - x2

            extend_img = cv2.copyMakeBorder(img, top_extend, bottom_extend, left_extend, right_extend,
                                            cv2.BORDER_CONSTANT, value=[0, 0, 0])

            # Still in 8-bit gray format
            # 2020-2-29: Need to try if we can get it back to color image
            #            Otherwise the extracted meteor image seems to be
            #            in gray color as well
            # extend_img = cv2.cvtColor(extend_img, cv2.COLOR_BGR2GRAY)

            # Remove the position info and other info from the file name
            # Leave the detection # info (the 0001 in this file name example:
            #     ER4A3109_r_size_(05760,03840)_0001_pos_(02301,02327)_(02941,02967)_gray_256_mask_640_transparent.png
            #
            # 2020-7-4: Decided to leave the position info in he file name.
            #           Because we may want to have a copy to print the file
            #           label near the meteor object.

            # string_to_match = '_pos_('
            string_to_match = '_gray_256_mask_'

            str_pos = image_file.find(string_to_match)

            if str_pos > -1:
                filename_no_ext = filename_no_ext[0:str_pos]

            filename_to_save = filename_no_ext + file_ext
            file_to_save = os.path.join(save_dir, filename_to_save)

            # cv2.imwrite(file_to_save, extend_img, [cv2.IMWRITE_PNG_COMPRESSION, 3])
            cv2.imencode(file_ext, extend_img, [cv2.IMWRITE_PNG_COMPRESSION, 3])[1].tofile(file_to_save)

            # 2020-7-4:
            # Add the file name as the label to the image, and save to another location
            string_to_match = '_center_('
            str_pos = image_file.find(string_to_match)

            if str_pos > -1:
                str_x_c = image_file[str_pos + 9:str_pos + 14]
                str_y_c = image_file[str_pos + 15:str_pos + 20]

                x_c = int(str_x_c)
                y_c = int(str_y_c) - 16
            else:
                x_c = 0
                y_c = 0

            # Get the short file name.
            # The file name would be:
            #     ER4A3109_r_size_(05760,03840)_0001_pos_(02301,02327)_(02941,02967).png
            #
            # The short file name would be:
            #     ER4A3109_r_0001
            label_name = image_file
            string_to_match = '_pos_('
            str_pos = image_file.find(string_to_match)

            if str_pos > -1:
                label_name = image_file[0:str_pos - 24] + image_file[str_pos - 5:str_pos]

            im_rgb = cv2.cvtColor(extend_img, cv2.COLOR_BGRA2RGBA)
            pil_im = Image.fromarray(im_rgb)

            draw = ImageDraw.Draw(pil_im)
            draw.text((x_c, y_c), label_name, fill=(0, 255, 255), font=ttFont)

            # b, g, r = pil_im.split()
            # pil_im = Image.merge("RGB", (r, g, b))

            '''
            cv2.putText(extend_img, label_name,
                        (x_c, y_c),
                        cv2.FONT_HERSHEY_SIMPLEX,
                        fontScale=3,
                        color=(0, 255, 255),
                        lineType=2)
            '''
            file_to_save = os.path.join(label_save_dir, filename_to_save)

            pil_im.save(file_to_save, "PNG")
            # cv2_im_processed = cv2.cvtColor(np.array(pil_im), cv2.COLOR_RGB2BGR)
            # cv2.imwrite(file_to_save, cv2_im_processed, [cv2.IMWRITE_PNG_COMPRESSION, 3])

            # sleep(0.02)
        # end for loop

    def extend_extracted_objects_to_original_photo_size_by_multi_threading(self, file_dir, save_dir, label_save_dir,
                                                                           verbose=1):
        print("\nExtending the extracted objects back to original photo size ...")
        included_extensions = ['jpg', 'JPG', 'jpeg', 'JPEG', 'bmp', 'BMP', 'png', 'PNG', 'tif', 'TIF', 'tiff',
                               'TIFF']

        if not os.path.exists(save_dir):
            os.mkdir(save_dir)

        if not os.path.exists(label_save_dir):
            os.mkdir(label_save_dir)

        image_list = [fn for fn in os.listdir(file_dir)
                      if any(fn.endswith(ext) for ext in included_extensions)]

        CPU_count = multiprocessing.cpu_count()

        # Add some restriction to avoid out of memory
        # if CPU_count > 8:
        #     CPU_count = 8
        if CPU_count > settings.MAX_CPU_FOR_MASK_EXTRACTION:
            CPU_count = settings.MAX_CPU_FOR_MASK_EXTRACTION

        num_image_list = len(image_list)

        size_per_sublist = math.ceil(num_image_list / CPU_count)
        print('    Totally {} images to be processed by {} CPU cores'.format(num_image_list, CPU_count))
        print("    Each core to handle {} images".format(size_per_sublist))

        thread_set = []

        start_from = 0
        num = 0

        # i = 0, 1, ... CPU_count - 1
        for i in range(CPU_count):
            # print(len(url_list_set[i]))
            # print(url_list_set[i])

            # 0 ~ 9:   10
            # 10 ~ 19: 10
            start_from = size_per_sublist * i

            # Extreme case, the CPU count is larger than
            # the number of images, we don't need to
            # create new thread
            if start_from >= num_image_list:
                break

            num = size_per_sublist
            if start_from + num > num_image_list:
                # (num_image_list-1) is the maximum index of the list
                num = (num_image_list-1)-start_from+1

            # print('\nThread-{0:03d}:'.format(i))
            # print(start_from)
            # print(num)

            subset_image_list = image_list[start_from:start_from+num]
            # print(subset_image_list)

            thread_set.append(threading.Thread(target=self.extend_extracted_objects_to_original_photo_size,
                                               args=(file_dir, save_dir, label_save_dir, subset_image_list, verbose)))

        # thread_set = [myThread(i + 1, "Thread-{0:03d}".format(i + 1), start_from, num) for i in range(NUM_OF_THREADS)]

        for index, thread_process in enumerate(thread_set):
            thread_process.start()
            print('    Thread # {0:03d} started ...'.format(index))

        for thread_process in thread_set:
            thread_process.join()

        print("\nMulti-thread process done !")

    # Sometimes the final combined image would still contain some objects we don't want.
    # Like satellites (escaped from recognition), or a few meteors we don't want.
    #
    # Print the file label near to the object could help to easily identify which file
    # we want to exclude from the final combination
    #
    # 2020-7-4: This is no need to use now. The function is combined to
    #           self.extend_extracted_objects_to_original_photo_size
    def print_filename_label_to_individual_final_image(self, file_dir, save_dir, verbose=1):
        print("\nGenerating files with label ...")
        included_extensions = ['jpg', 'JPG', 'jpeg', 'JPEG', 'bmp', 'BMP', 'png', 'PNG', 'tif', 'TIF', 'tiff',
                               'TIFF']

        if not os.path.exists(save_dir):
            os.mkdir(save_dir)

        image_list = [fn for fn in os.listdir(file_dir)
                      if any(fn.endswith(ext) for ext in included_extensions)]

        try:
            ttFont = ImageFont.truetype("arial.ttf", 16)
        except Exception:
            ttFont = ImageFont.load_default()

        for image_file in image_list:
            if verbose:
                print("... Processing {} ...".format(image_file))

            filename_w_path = os.path.join(file_dir, image_file)

            # x1, y1, x2, y2 = self.get_image_pos_from_file_name(image_file)
            # x0 = int((x1 + x2) / 2)
            # y0 = int((y1 + y2) / 2) - 20

            string_to_match = '_center_('
            str_pos = image_file.find(string_to_match)

            if str_pos > -1:
                str_x_c = image_file[str_pos + 9:str_pos + 14]
                str_y_c = image_file[str_pos + 15:str_pos + 20]

                x_c = int(str_x_c)
                y_c = int(str_y_c) - 16
            else:
                x_c = 0
                y_c = 0

            im = Image.open(filename_w_path)
            draw = ImageDraw.Draw(im)

            # Get the short file name.
            # The file name would be:
            #     ER4A3109_r_size_(05760,03840)_0001_pos_(02301,02327)_(02941,02967).png
            #
            # The short file name would be:
            #     ER4A3109_r_size_0001

            label_name = image_file

            string_to_match = '_pos_('
            str_pos = image_file.find(string_to_match)

            if str_pos > -1:
                label_name = image_file[0:str_pos-24] + image_file[str_pos-5:str_pos]

            draw.text((x_c, y_c), label_name, fill=(0, 255, 255), font=ttFont)

            file_to_save = os.path.join(save_dir, image_file)
            im.save(file_to_save, "PNG")
        # end for loop

    def combine_meteor_images_to_one(self, meteor_dir, save_dir, specified_filename='final.png', verbose=1):
        print("\nCombining the meteor images to {} ...".format(specified_filename))
        included_extensions = ['jpg', 'JPG', 'jpeg', 'JPEG', 'bmp', 'BMP', 'png', 'PNG', 'tif', 'TIF', 'tiff', 'TIFF']

        if not os.path.exists(save_dir):
            os.mkdir(save_dir)

        meteor_list = [fn for fn in os.listdir(meteor_dir)
                       if any(fn.endswith(ext) for ext in included_extensions)]

        if len(meteor_list) == 0:
            print("No image file in folder {}".format(meteor_dir))
            return

        meteor_file = meteor_list[0]
        filename_w_path = os.path.join(meteor_dir, meteor_file)
        if verbose:
            print("... Merging {} ...".format(meteor_file))
        combined_img = Image.open(filename_w_path)

        i = 0

        for meteor_file in meteor_list:
            # The first image had been opened before the for-loop
            if i > 0:
                filename_w_path = os.path.join(meteor_dir, meteor_file)

                if verbose:
                    print("... Merging {} ...".format(meteor_file))

                    img = Image.open(filename_w_path)
                    combined_img = Image.alpha_composite(combined_img, img)
            i += 1
            # sleep(0.02)

        file_to_save = specified_filename
        file_to_save = os.path.join(save_dir, file_to_save)

        combined_img.save(file_to_save, 'PNG')