Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

SamBuilder should support writing out to a path _without_ sorting. #20

Closed
tfenne opened this issue Nov 27, 2022 · 1 comment
Closed

SamBuilder should support writing out to a path _without_ sorting. #20

tfenne opened this issue Nov 27, 2022 · 1 comment

Comments

@tfenne
Copy link
Member

tfenne commented Nov 27, 2022

I need to emit query-grouped BAMs, so I'm doing this outside SamBuilder for now. But would be nice if the to_path() method had a sort: bool = True parameter that could be turned off. The header would then need to be edited to have SO:unsorted upon writing.
@NatPRoach NatPRoach mentioned this issue Dec 27, 2022
Merged
@clintval
Copy link
Member

Closed with #25

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@tfenne @clintval